Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F22
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228...    30   1.6  
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642...    30   1.6  
12_02_0181 - 14989506-14989614,14989651-14989781                       28   4.9  
12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741     28   4.9  
05_04_0454 + 21383068-21384525                                         28   4.9  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    28   6.5  
03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120     28   6.5  
11_01_0795 + 6994597-6994774,6994812-6995092,6997289-6997335,699...    27   8.6  

>08_01_1084 -
           11120719-11120950,11121035-11121133,11122446-11122849,
           11123559-11124197
          Length = 457

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -1

Query: 597 SYSIGQTKGEPPSPLQVSLPGHLQRT*RTRAGRTSFPVSLSEAYSYMCSDLPRELP 430
           S S  + K +PP P    +P  L+R+ RTR    S   S S A S    + P E P
Sbjct: 44  SSSSKRPKKQPPPPRATPIPVVLRRSLRTRGLPPSTSTSSSSAASPPAPESPPEAP 99


>02_02_0522 -
           11161385-11161537,11162513-11162668,11164176-11164298,
           11164404-11164466,11164512-11164577,11165128-11165232,
           11165336-11165435,11165520-11165590,11166037-11166093,
           11167215-11167292,11167367-11167441,11168490-11168540,
           11169015-11169094,11169560-11169660,11169749-11169810,
           11170084-11170590
          Length = 615

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 401 RSSPDHIKKGGSSRGKSEHMYE*ASDNDTGKLV 499
           R SPDH++KG S +    H +   +D+ TG LV
Sbjct: 582 RKSPDHLEKGKSLKETGRHTWS-GNDDGTGFLV 613


>12_02_0181 - 14989506-14989614,14989651-14989781
          Length = 79

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 177 KEIYPYQDREVESVAIHKDFDSVTMFYDISILFL 278
           KE YP   R +   A+ KD    T+F +++ILFL
Sbjct: 42  KECYP--SRLLLETAVRKDESKATLFVNVTILFL 73


>12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741
          Length = 118

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 78  SLIHPSAVLSAAHYVAKVPKLRVRAGEWDTQSTKEIYPYQDR 203
           S++HP+  ++   + A           WDTQ TKE+ PY  R
Sbjct: 70  SMMHPNVEITRTGFRAVTTCRLPLTNPWDTQQTKEL-PYLSR 110


>05_04_0454 + 21383068-21384525
          Length = 485

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
 Frame = +2

Query: 164 HAEHQRDLPVSGQGGRKRCHT*RL*QRYNVLRHQ-HSIPEESNGNDTECRSSL---PPSE 331
           ++  QR +  +GQ  R++ +     QR+ V     H   +    ND + R  +      +
Sbjct: 285 YSHGQRQVYGNGQDQRQQLNNNGRDQRHQVYSSNCHDQRQPVYNNDQDQRQQVYNNGQDQ 344

Query: 332 RRTGY-AWHTLHCHGLGEGQVRKGRSSPDHIK----KGGSSRGKSEHMYE*ASDNDTGKL 496
           RR G+  +     +  G+GQ++ G S+P+  +    + G S G+     + A ++  G  
Sbjct: 345 RRQGHHGYRKPESYQGGQGQLQYGYSAPNRQRQQQQQQGYSSGRPSAGGQYAGEDSYGSR 404

Query: 497 VLPARVLHVRWR 532
            +PA   H  +R
Sbjct: 405 QIPANQQHQHFR 416


>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 245  YNVL-RHQHSIPEESNGNDTECRSSLPPSERRTGYAWH 355
            YN+  +H HS+    +  D    SS PP+    GYA H
Sbjct: 1113 YNIQEQHPHSVANNRSNMDPCVVSSHPPAPYNCGYAGH 1150


>03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120
          Length = 197

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 71  WWILDTSQRCS*RGALRCKSPEAAREGRRMG 163
           WW  +TS+RCS  G L+   PE A  G   G
Sbjct: 115 WWEWETSRRCSHVG-LQAVVPEVASGGAHRG 144


>11_01_0795 +
           6994597-6994774,6994812-6995092,6997289-6997335,
           6997550-6997772
          Length = 242

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 430 WKFPW*IGTHV*ISFRQ--RYWEACSTCTSPSCALE--VTRQGHLQGR 561
           WK+P  +G    ++  +  ++W  C  C+ PSC  E    + G   GR
Sbjct: 88  WKWPVGLGFDWAVARGRGPKFWVCCGICSLPSCGAENPAAKSGGAPGR 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,966,050
Number of Sequences: 37544
Number of extensions: 518378
Number of successful extensions: 1365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)