Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F22
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08570.1 68418.m01020 pyruvate kinase, putative similar to py...    31   0.77 
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    30   1.0  
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    29   1.8  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    29   1.8  
At3g21000.1 68416.m02655 expressed protein ; expression supporte...    29   3.1  
At2g25150.1 68415.m03008 transferase family protein similar to 1...    28   5.4  
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored...    28   5.4  
At5g51105.1 68418.m06337 expressed protein                             27   7.2  
At3g43160.1 68416.m04554 expressed protein merozoite surface pro...    27   7.2  
At1g59540.1 68414.m06694 kinesin motor protein-related similar t...    27   9.5  

>At5g08570.1 68418.m01020 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 510

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = +3

Query: 78  SLIHPSAVLSAAHYVAKVPKLRVRAGEWDTQSTKEIYPYQDREVESVAIHKDFDSVTMFY 257
           S +H + +L+A     K P++R       T   K+  P Q +E + + I  D+D      
Sbjct: 70  SAMHNTGILAAVMLDTKGPEIR-------TGFLKDGNPIQLKEGQEITITTDYDIQGDES 122

Query: 258 DISILFLKSPMEMTPNVGVVC 320
            IS+ + K P+++ P   ++C
Sbjct: 123 TISMSYKKLPLDVKPGNTILC 143


>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
           domain-containing protein / F-box family protein similar
           to SP|P36607 DNA repair protein rad8
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 118 TLQKSRSCA*GQENGTRRAPKRSTRIRTG 204
           T QK R C  G+ +G R+ PK   R+ +G
Sbjct: 82  TPQKRRKCVEGESSGKRKTPKSKRRVLSG 110


>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
 Frame = +3

Query: 60  IYVSGGSLIHPSAVLSAAHYVAKVPKLRVRAG-----EWDTQSTKEIYPYQDREVESVAI 224
           + ++G   +    V    H V+    +  R+G     +W +   KEI PY ++E+E++A 
Sbjct: 696 VMITGDQALTACHVAGQVHIVSNPVLILGRSGSGNEYKWVSPDEKEIIPYSEKEIETLAE 755

Query: 225 HKDF----DSVTMFYDISILFLKSP 287
             D     DS+ M    S +    P
Sbjct: 756 THDLCIGGDSIEMLQATSAVLRVIP 780


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +3

Query: 84  IHPSAVLSAAHYVAKVPKLRVRAGEWDTQSTKEIYPYQDREVESVAIHKDFDSVTMFYDI 263
           IH S   +A  Y  + P  R +  +   Q +   Y Y   + ESV I K+ +SV +F ++
Sbjct: 386 IHESRPKTAV-YGGRSPDHREKISQEMGQRSSHAYNYLGSKAESVYIEKNEESVLLFPEL 444

Query: 264 SILFLKSPMEMTPN 305
               + SP E  P+
Sbjct: 445 ----ILSPQERPPS 454


>At3g21000.1 68416.m02655 expressed protein ; expression supported
           by MPSS
          Length = 405

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +3

Query: 258 DISILFLKSPMEMTPNVGVVCLPLKDEPA----MPGTRCIAMGWGKDKFG-KEGRHQTIL 422
           DI I+   +P+ MTP V       +   A    + GT  +  G G  K   KEG+ +TI 
Sbjct: 278 DIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIR 337

Query: 423 KKVEVPVVNRN 455
             + VP +NRN
Sbjct: 338 NVIFVPGLNRN 348


>At2g25150.1 68415.m03008 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase
           [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
           III-2-O-benzoyl transferase [gi:11559716] from Taxus
           cuspidata; contains Pfam transferase family domain
           PF00248; contains EST gb:R65039
          Length = 461

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 291 EMTPNVGVVCLPLKDEPAMPGTRCIAMGWGKDKFGKEGRHQTILKKV 431
           E T +VG++  P K +P+M G   + M   +D   +  R    +KK+
Sbjct: 409 ESTVHVGMILKPSKSDPSMEGGVKVIMKLPRDAMVEFKREMATMKKL 455


>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 594

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 60  IYVSGGSLIHPSAVLSAAHYVAKVPKLRVRAGEWDTQSTKEIYPYQDREV 209
           +Y +   ++   + ++A  Y         RAG WD +  KE YP+ +RE+
Sbjct: 130 VYNARARVLGGGSCINAGFYSRADAAFVKRAG-WDPKLVKESYPWVEREI 178


>At5g51105.1 68418.m06337 expressed protein
          Length = 123

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 403 PSFPNLSFPQPMAMQRVPGIAGS 335
           P FP + FP P   +  PG+AGS
Sbjct: 24  PQFPPIMFPFPNPFKPSPGMAGS 46


>At3g43160.1 68416.m04554 expressed protein merozoite surface
           protein 2 (MSP-2), EMBL:PFU72951, Plasmodium falciparum
          Length = 295

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 148 GQENGTRRAPKRSTRIRTGRSKAL 219
           G EN + R  + STR + GRSK++
Sbjct: 124 GTENSSTRTAESSTRTKNGRSKSI 147


>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
           kinesin motor protein (kin2) GI:2062751 from (Ustilago
           maydis)
          Length = 823

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 237 QSLYVWQRFRPPCPDTGRSLW 175
           + + V  R RPP P+ G SLW
Sbjct: 2   EKICVAVRVRPPAPENGASLW 22


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,945,714
Number of Sequences: 28952
Number of extensions: 380636
Number of successful extensions: 1051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)