Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F20
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 34 0.093
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 31 0.49
08_02_1557 + 27867977-27869134 29 2.6
06_02_0324 + 14414422-14414541,14415271-14415347,14415807-144159... 29 2.6
04_04_0236 + 23825368-23825763,23826229-23828667 29 2.6
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940... 29 2.6
08_01_0303 + 2493388-2493954 28 6.1
01_06_0240 + 27794741-27795466 28 6.1
11_05_0096 - 19029632-19029937,19030376-19031197 27 8.0
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 27 8.0
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 33.9 bits (74), Expect = 0.093
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 226 FETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL-AGHTSKYPYPILYDTDLKLKS 402
FET + E S D L+T+++DNL + + Y + TS Y YP L D + L
Sbjct: 540 FETKAALENSSSDDDSQLLTRIIDNLVDESHESNQTYSDSNDTSLYNYPSLSDWN-DLNE 598
Query: 403 SKLHFDDXERYE 438
++ F+D ER E
Sbjct: 599 VEI-FEDIERRE 609
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 31.5 bits (68), Expect = 0.49
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 340 AGHTSKYPYPILYDTDLKLKSSKLHFDD-XERYERMPFVKTGCDTFDKYEKNVIDFMDTF 516
AG S P I+ D +++KLHFDD +RY + TF+K + ++ + F
Sbjct: 300 AGRLSPKPDIIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKTFEKRPREMMLRREYF 359
Query: 517 KIKLGLSNMVSSEKSL 564
L+ V EK L
Sbjct: 360 NAVGYLNQNVPEEKKL 375
>08_02_1557 + 27867977-27869134
Length = 385
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 101 VRASAAYPLARSQAWCKSLAASVP 30
V AS+AYP Q+ CKS AAS P
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSP 241
>06_02_0324 +
14414422-14414541,14415271-14415347,14415807-14415994,
14416276-14416373,14416633-14416766,14416852-14416953,
14417931-14418038,14418335-14418465,14420068-14420142,
14420439-14420518,14421229-14421320,14422333-14422634,
14422717-14422856
Length = 548
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 340 AGHTSKYPYPILYDTDLKLKSSKLHFDD-XERYERMPFVKTGCDTFDKYEKNVIDFMDTF 516
AG S P I+ D +++KLHFDD +RY + F+K + ++ + F
Sbjct: 118 AGRLSPKPDIIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKIFEKRPREMMLRREYF 177
Query: 517 KIKLGLSNMVSSEKSL 564
L+ V EK L
Sbjct: 178 NAVGYLNQNVPEEKKL 193
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 334 YLAGHTSKYPYPILYDTDLKLKSSKLHFDDXERYERMPFVKTGCDTFDKYEKNV--IDFM 507
Y+ T+ + +DT +KL+S + +DD +++ P V +G F++ NV I+
Sbjct: 588 YITPETTIKTFIEQFDTAMKLRSDREAYDDFRSFQQRPQVLSGL-LFEEQFANVYTINMF 646
Query: 508 DTFKIKL-GLSNMVSSEKS 561
F+ L L N+ +E S
Sbjct: 647 QKFQDHLKQLMNVTCTEVS 665
>01_07_0131 +
41292800-41293400,41293522-41293649,41293759-41294019,
41294154-41294416,41294507-41294831
Length = 525
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 410 YISTTKSATSVCLLSKLDVIHSTNMKRTLSTLW--IHSKLNWVCP 538
YIS+T T V L LD +H++ +K LW H LN + P
Sbjct: 341 YISSTLFYTDVTYLEFLDRVHTSELKLRAQGLWEVPHPWLNLLIP 385
>08_01_0303 + 2493388-2493954
Length = 188
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 13 CIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRC 144
C HA+S AA +LH+ C R + L T L A VRC
Sbjct: 15 CHHAISRRSAAVELHR-CSRRRRPSPLTTTVALTRRRSPAAVRC 57
>01_06_0240 + 27794741-27795466
Length = 241
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 109 LPAVLPDACVRCTDADKPHAIGDV 180
+PA P A VRCT A KP A G +
Sbjct: 24 IPAATPSAIVRCTAAPKP-ATGSI 46
>11_05_0096 - 19029632-19029937,19030376-19031197
Length = 375
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 46 KDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGD 177
+ L D+ G+ A+A + A PD ++CT D PH + D
Sbjct: 206 RGLRSLVDVGGGHGAVAKA--IAAAFPD--IKCTVMDLPHVVAD 245
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 158 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWC 54
L+A+ T A+ G+ + YP+ S AWC
Sbjct: 165 LNATADYTAAAARRFGTGEISFDPTYPVIYSMAWC 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,429,658
Number of Sequences: 37544
Number of extensions: 264894
Number of successful extensions: 825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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