Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F18
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.45
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 1.0
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 3.1
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 3.1
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 3.1
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 4.2
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 5.5
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.3
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 25 7.3
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 7.3
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 7.3
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 25 7.3
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 24 9.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 9.6
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 24 9.6
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.45
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 111 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 218
++ L+ A L + YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 1.0
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 176 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 325
P F ++D L +YR+K +D HD K+ ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 188 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTY 358
+NMD LL Y TK D + +NY ++ Y + N ++F+ +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 197 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 316
D + I R K G + HD +NY ++ E++ + N S
Sbjct: 83 DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -1
Query: 334 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 239
+ KE I+ +++I ++FLF N +++ +C VKN
Sbjct: 22 VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 4.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 286 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 182
FLF N N SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 83 NEGQFL-YAYYIAVIQRNDTHG 145
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 332 NNEEQRLTYLTEDIGFNSYYYYFHSHL 412
+ + Q++ Y+ ++ NSY Y HSH+
Sbjct: 313 SRKTQKIHYINDNDPSNSYSSYQHSHV 339
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 24.6 bits (51), Expect = 7.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 265 LWNCKRGRAVCVLRQLFQH 321
+WN + G +C R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 230 QDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE 343
Q+ ++ + + +G+V E ++V S TFL +NE+
Sbjct: 128 QNILVQVCQPVRHGVVDSETKFVIERKDSFTFLASNEK 165
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 290 QYVYYANYSNTFLYNNEEQRLT--YLTEDIGFNSYYYYFHSHLPFWWSSERY 439
Q ++ SN + N L+ Y+T D GF S Y Y S + S E +
Sbjct: 265 QNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQLSDEDF 316
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 7.3
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +2
Query: 146 FVLPAPYEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 325
FV+ + +P F NMD L K+ + GI DAK I +++ +Y+++A F
Sbjct: 689 FVVSSHIRSHPAFDPNMDVLKKV---PTETGI--DAKPIPQDLLR---KYIHFAR-EKVF 739
Query: 326 --LYNNEEQRLTYLTEDI 373
L +E++++ L D+
Sbjct: 740 PRLQQMDEEKISRLYSDM 757
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/51 (19%), Positives = 24/51 (47%)
Frame = +2
Query: 224 KMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIG 376
K D L A+ + + E Y + NY + ++ +++ ++ +D+G
Sbjct: 346 KGNDFSLEAAQVLERLSKSDSEAYARFKNYKSAYIPKSDKNENSFFKKDVG 396
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 365 EDIGFNSYYYYFHSHLPFWWSSERYG 442
+DIG +Y L F W S+R+G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.2 bits (50), Expect = 9.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 392 YYFHSHLPFWWSSERY 439
Y + PFWW+S+R+
Sbjct: 1469 YQLLKNNPFWWTSQRH 1484
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 335 NEEQRLTYLTEDIGF-NSYYYYFHSHLPFWWSSE 433
N + + YLT D+ + S YYY L F +++E
Sbjct: 256 NGQNQSVYLTYDVPYGRSLYYYTSCALEFRFTNE 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,762
Number of Sequences: 5004
Number of extensions: 38167
Number of successful extensions: 113
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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