Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F18
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)                   27   5.6  
SB_22879| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    27   7.4  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           27   9.7  
SB_9710| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)
          Length = 316

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 319 VGIVGVIHILLFLFYNSIINSLCIVKNTV 233
           VG + + +ILLF     +I ++C+V NTV
Sbjct: 168 VGFLALNNILLFKVVGCVIITICLVLNTV 196


>SB_22879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = -1

Query: 319 VGIVGVIHILLFLFYNSIINSLCIVKNTVLHFSAINLK*SVHINEELWINFI 164
           + I+ +I+I++ +    IIN + I+ N +++   IN+   ++I   + IN I
Sbjct: 24  INIIIIINIIINIIIIIIINIIIIIINIIINIIIINIIIIINIIINIIINII 75


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +2

Query: 275 VKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLK 451
           ++  +Q++  A +  TF+Y+  E+       D    +  Y  H  L FW   +   N++
Sbjct: 644 IENLKQFIVQARFVETFVYDMTEKPGKCAIRDRERKTISYNDHRFLVFWTDFQNTNNMR 702


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 225 KCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTLSF 329
           + K  F     ++ +EL  RKSS+ IT   P LSF
Sbjct: 89  RTKKDFLAKVNIVFVELKLRKSSLAITIIYPLLSF 123


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 389 YYYFHSHLPFWWSSER 436
           +YYF   +  WW SER
Sbjct: 7   FYYFTKFIDIWWCSER 22


>SB_9710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 287 EQYVYYANYSNTFLYNNEEQRLTYLTEDI 373
           E Y YY + ++  ++NN+  R +   +DI
Sbjct: 27  EPYTYYQSNASCIIFNNDSSRSSRYNDDI 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,818
Number of Sequences: 59808
Number of extensions: 279095
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)