Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F18
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    28   3.7  
U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine rece...    27   8.6  

>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +3

Query: 36  TLKPSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTL 203
           T  P T  PLS+ CT ++  S   ++ +++   + +DS +  ++  +H   +  T+
Sbjct: 256 TADPQTNEPLSITCT-VKSVSKASVLWKVNGIKVSVDSSFYTVVTSVHEDFIESTI 310


>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 9   FSTCSTMLKTLKPSTRVPLSLV 74
           F TCS  +KT+K    +PLS+V
Sbjct: 294 FLTCSETIKTVKSDALIPLSIV 315


>U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 33 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 337 IIVKESVGIVGVIHILLFLFYNSII 263
           ++   SV I+G+I ++LF FY++ +
Sbjct: 228 VVSSISVAILGIIQLVLFCFYDTFL 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,212,852
Number of Sequences: 27780
Number of extensions: 207505
Number of successful extensions: 541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)