Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F17
(195 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 24 2.4
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 24 2.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 3.2
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 24 3.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 23 5.6
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 23 5.6
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 23 7.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 23 7.4
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 23 7.4
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 23 7.4
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 22 9.7
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 22 9.7
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 22 9.7
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 24.2 bits (50), Expect = 2.4
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +2
Query: 134 QDVDQVNVDDEYYKIGK 184
Q+ + N+DDEY+++G+
Sbjct: 65 QEETETNLDDEYHRLGE 81
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 101 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD 187
VER+K++ +L Q D + ++DE YY + D
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMD 254
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 23.8 bits (49), Expect = 3.2
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 47 VVSPKTYHFKTK-DVDAVFVERQKKVLSLFQDVDQVNVD 160
V+ PKT+H+K + F + QKK+ DV D
Sbjct: 234 VIEPKTFHYKNGISISMKFDKDQKKL--FINDVSTTKYD 270
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 23.8 bits (49), Expect = 3.2
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +2
Query: 110 QKKVLSLFQDVDQVNVDDEY 169
++++ SL ++++ N+DDEY
Sbjct: 189 RERLRSLADEIEEENIDDEY 208
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 74 KTKDVDAVFVERQKKVLSLFQD 139
KT++ + +E+QKK++ F+D
Sbjct: 1276 KTQEKKRLALEKQKKIMQQFRD 1297
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 86 VDAVFVERQKKVLSLFQDVDQVNV 157
VD + ER + ++ +DV ++NV
Sbjct: 16 VDQLIAERSMLIKNMLEDVGEINV 39
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 97 VCGAPEKGFIPFPRC 141
+CG+ +K F FP+C
Sbjct: 256 LCGSAKKKFHSFPKC 270
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 45 VWCHRKRITSRQKMSTQCLWSARK 116
V CH +++ ST+ LWS K
Sbjct: 311 VSCHDSIVSTMHWASTELLWSCSK 334
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 22.6 bits (46), Expect = 7.4
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +3
Query: 93 QCLWSARKRFYPFS 134
+C W +K++YP S
Sbjct: 394 ECWWLKKKQYYPLS 407
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 54 HRKRITSRQKMSTQCLW 104
+ K++ +QK T+CLW
Sbjct: 237 YEKKLGLKQKALTKCLW 253
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 22.2 bits (45), Expect = 9.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 50 VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKD 187
+S K++ T VDA ++ L +DVD+ V + K+ +D
Sbjct: 131 LSTKSHSVSTHGVDAFHKDQATIPKKLKKDVDERVVSKDIPKLHRD 176
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/29 (24%), Positives = 18/29 (62%)
Frame = +2
Query: 17 AGLIALVQSSVVSPKTYHFKTKDVDAVFV 103
A + L+ ++++ +TYH+++ +FV
Sbjct: 168 AACMVLISTAIMISRTYHYRSLPGTWIFV 196
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 74 KTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGK 184
KTK D + + Q K+ FQ++ + Y+ G+
Sbjct: 786 KTKSFDCIVIASQPKLSLAFQNLTSGKFNFAEYETGE 822
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,817
Number of Sequences: 5004
Number of extensions: 11472
Number of successful extensions: 46
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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