Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F17
(195 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0033 + 27820563-27823482,27823593-27823996 30 0.30
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368 27 2.1
07_03_0154 + 14509979-14512033 27 2.8
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333 26 4.9
11_08_0014 - 27631971-27632374,27632486-27635402 26 4.9
10_08_0244 + 16129365-16129424,16130203-16130391,16130918-16131049 26 4.9
03_02_0637 - 10009580-10009903,10013314-10014153 26 4.9
01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253... 26 4.9
08_02_0841 - 21749599-21749978,21750409-21753367 25 6.4
04_03_0917 + 20798977-20801369,20801578-20801581 25 8.5
04_03_0848 + 20261635-20261668,20261824-20261824,20261861-202619... 25 8.5
02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495 25 8.5
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 29.9 bits (64), Expect = 0.30
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 49 GVTENVSLQDKRCRRSVCGAPEKGFIPFP 135
GV N++L+ R +CG+P G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737
>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
Length = 601
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 7 PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 150
PS + A + Q GV +VSL+ ++ + +K + PF C PS
Sbjct: 296 PSPTKAQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPS 343
>07_03_0154 + 14509979-14512033
Length = 684
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 7 PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRP 147
PSSS P A + N KR +S +PE+G +P P P
Sbjct: 7 PSSSAPSSPAASSDSIDLNFLPFLKREPKSEPASPERGPLPLPAAAP 53
>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
Length = 1061
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 49 GVTENVSLQDKRCRRSVCGAPEKGFIP 129
GV N++L ++CG P GF+P
Sbjct: 664 GVFSNITLISLMGNAALCGLPRLGFLP 690
>11_08_0014 - 27631971-27632374,27632486-27635402
Length = 1106
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 49 GVTENVSLQDKRCRRSVCGAPEKGFIP 129
GV N++L ++CG P GF+P
Sbjct: 709 GVFSNITLISLMGNAALCGLPRLGFLP 735
>10_08_0244 + 16129365-16129424,16130203-16130391,16130918-16131049
Length = 126
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 55 TENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 150
T N S D+RC R GA F+ CRPS
Sbjct: 46 TANYSFSDRRCTRRQRGAC-GDFVNLKICRPS 76
>03_02_0637 - 10009580-10009903,10013314-10014153
Length = 387
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 43 QCGVTENVSLQDKRCRRSVCGAP 111
+CG++ LQ ++ ++CGAP
Sbjct: 347 RCGLSGKAQLQSQQMATAICGAP 369
>01_05_0618 +
23723441-23723465,23724733-23724788,23725108-23725372,
23725623-23725759,23725849-23725943,23726033-23727057,
23727293-23727453,23727816-23727892,23727978-23728125,
23728364-23728441,23728611-23728838
Length = 764
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 25 HCPRAIQCGVTENVSLQDKRCRRSVCGAPEK 117
HC +QC + Q K R ++ G+P+K
Sbjct: 201 HCVEELQCNIVVMKRSQPKVVRLNLVGSPDK 231
>08_02_0841 - 21749599-21749978,21750409-21753367
Length = 1112
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 11 VLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQV-NVDDEY 169
+ G ++++ S + K YH KTK++++V + L + ++ N DD+Y
Sbjct: 765 LFVGAVSILILSCILLKFYHPKTKNLESVSTLFEGSSSKLNEVIEATENFDDKY 818
>04_03_0917 + 20798977-20801369,20801578-20801581
Length = 798
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 40 IQCGVTENVSLQDKRCRRSVCGAPEKGFI 126
+ CG+ N S+QD+ G P G I
Sbjct: 343 LDCGINRNTSMQDRFHPMPCVGLPSNGQI 371
>04_03_0848 +
20261635-20261668,20261824-20261824,20261861-20261924,
20262647-20262739,20262818-20262926,20263212-20263261,
20263335-20263425,20263660-20263730,20263979-20264077,
20264241-20264307,20264507-20264592
Length = 254
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 35 VQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYD 193
VQ V P Y D+D ++ ++V QD Q++ DDEYY+ D D
Sbjct: 200 VQMQEVPPDFY---IPDIDEDELDPDERVDQHTQD-KQIHRDDEYYEGDNDND 248
>02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495
Length = 344
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 10 SSSGAHCPRAIQCGVTENVSLQDKRC 87
++SGA CP A C + ++ LQ + C
Sbjct: 142 AASGADCPLAAVCDLNVHLPLQAEVC 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,003,450
Number of Sequences: 37544
Number of extensions: 81115
Number of successful extensions: 229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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