Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F17
(195 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8) 28 1.4
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 27 3.2
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7) 26 5.5
SB_4149| Best HMM Match : VWA (HMM E-Value=0) 26 5.5
SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71) 26 5.5
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_49074| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_15111| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_49985| Best HMM Match : RuvB_C (HMM E-Value=3.6) 25 7.3
SB_2981| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_42534| Best HMM Match : DUF699 (HMM E-Value=0) 25 9.6
SB_28692| Best HMM Match : SpoV (HMM E-Value=9.6) 25 9.6
SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
SB_10178| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
SB_50361| Best HMM Match : RNA_pol_delta (HMM E-Value=2.2) 25 9.6
SB_17446| Best HMM Match : Vicilin_N (HMM E-Value=2.2) 25 9.6
SB_10930| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
SB_6374| Best HMM Match : SpoV (HMM E-Value=9.6) 25 9.6
>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
Length = 62
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 43 QCGVTENVSLQDKRCRRSVCG 105
+C + +NV D+ CRRS CG
Sbjct: 29 KCHMEKNVIFDDRACRRSRCG 49
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 17 AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGK 184
+G+I L + + V+ Y+FK K D +F +L + +DQ N ++ G+
Sbjct: 1370 SGIITLSREAPVNVWEYNFKVKATDGIFTATTDVLLDI---IDQNNHKPQFTNCGE 1422
>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1460
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 113 KKVLSLFQDVDQVNVDDEYYKIGKDY 190
++ +SLF+DVD+ D+ Y KI Y
Sbjct: 93 ERCISLFKDVDKYKHDERYLKIWIQY 118
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 5 VLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQ 112
+++LA ++A V +V+PK K +D+D ++E +
Sbjct: 618 LVILAMIVAAVVIIIVAPKCAKAKVRDMDKSWLENE 653
>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
Length = 483
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 25 HCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFI 126
HCP C ENV L+ V AP +GF+
Sbjct: 225 HCPFERLCVEAENVVLEMPLAGYEVPEAPSRGFL 258
>SB_4149| Best HMM Match : VWA (HMM E-Value=0)
Length = 1141
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +1
Query: 7 PSSSGAHCPR--AIQCGVTENVSLQDKRCRRSVCGA 108
P G CP ++ C EN QD C CG+
Sbjct: 663 PLPPGGTCPPQPSVNCSTDENCQSQDVACCYDSCGS 698
>SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)
Length = 696
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 14 LAGLIALVQSSVVSPKTYHFKTKD 85
L G+I+L Q ++P Y+F+ KD
Sbjct: 352 LEGMISLPQEIEIAPMNYNFERKD 375
>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 25 HCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFI 126
HCP C ENV L+ V AP +GF+
Sbjct: 39 HCPFERLCVEAENVVLEMPLAGYEVPEAPSRGFL 72
>SB_49074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = +1
Query: 22 AHCPRAIQCGVTENVS-----LQDKRCRRSVCGAPEKGFIPFPR 138
A C A G E VS ++KR R V + G+IP PR
Sbjct: 64 AECILAYYVGTDEGVSEVLHVAREKRLHRCVSRICDTGYIPLPR 107
>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2641
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 11 VLAGLIALVQSSVVSPKTYHFKTKDVD 91
+ A IA ++ VVSP F +KD D
Sbjct: 552 IKARTIARIKKQVVSPAAVQFSSKDTD 578
>SB_15111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = +1
Query: 22 AHCPRAIQCGVTENVS-----LQDKRCRRSVCGAPEKGFIPFPR 138
A C A G E VS ++KR R V + G+IP PR
Sbjct: 72 AECILAYYVGTDEGVSEVLHVAREKRLHRCVSRICDTGYIPLPR 115
>SB_49985| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 127
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = +1
Query: 22 AHCPRAIQCGVTENVS-----LQDKRCRRSVCGAPEKGFIPFPR 138
A C A G E VS ++KR R V + G+IP PR
Sbjct: 64 AECILAYYVGTDEGVSEMLHVAREKRLHRCVSRICDTGYIPLPR 107
>SB_2981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 49 GVTENVSLQ-DKRCRRSVCGAPEKGFIPFPR 138
GV+E + +Q +KR R V + G+IP PR
Sbjct: 40 GVSEVLHVQGEKRLHRCVSRICDTGYIPLPR 70
>SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)
Length = 739
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 13 SSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 150
S A P + G+T +L+ KR P+K P+C+P+
Sbjct: 609 SKDADAPIYSKVGLTYGKALKFKRIFEESFQLPKKSSSALPKCKPT 654
>SB_28692| Best HMM Match : SpoV (HMM E-Value=9.6)
Length = 145
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 13 SSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 150
S A P + G+T +L+ KR P+K P+C+P+
Sbjct: 15 SKDADAPIYSKVGLTYGKALKFKRIFEESFQLPKKSSSALPKCKPT 60
>SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 43 QCGVTENVSLQDKRCRRSVCGAPEKGFI 126
+CGVT++ ++ D + +R+ G P F+
Sbjct: 521 RCGVTDSPTVPDDKGKRNAKGRPMSMFV 548
>SB_10178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 13 SSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 150
S A P + G+T +L+ KR P+K P+C+P+
Sbjct: 15 SKDADAPIYSKVGLTYGKALKFKRIFEESFQLPKKSSSALPKCKPT 60
>SB_50361| Best HMM Match : RNA_pol_delta (HMM E-Value=2.2)
Length = 240
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 13 SSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 150
S A P + G+T +L+ KR P+K P+C+P+
Sbjct: 15 SKDADAPIYSKVGLTYGKALKFKRIFEESFQLPKKSSSALPKCKPT 60
>SB_17446| Best HMM Match : Vicilin_N (HMM E-Value=2.2)
Length = 381
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 13 SSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 150
S A P + G+T +L+ KR P+K P+C+P+
Sbjct: 15 SKDADAPIYSKVGLTYGKALKFKRIFEESFQLPKKSSSALPKCKPT 60
>SB_10930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 86 VDAVFVERQKKVLSLFQDVDQVNVDDE 166
+D V+V Q KV+ +DQVNV D+
Sbjct: 208 MDQVYVMDQVKVMDQVNVMDQVNVMDQ 234
>SB_6374| Best HMM Match : SpoV (HMM E-Value=9.6)
Length = 202
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 13 SSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 150
S A P + G+T +L+ KR P+K P+C+P+
Sbjct: 56 SKDADAPIYSKVGLTYGKALKFKRIFEESFQLPKKSSSALPKCKPT 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,821,539
Number of Sequences: 59808
Number of extensions: 95172
Number of successful extensions: 891
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 43
effective length of database: 14,249,713
effective search space used: 299243973
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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