Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F17
         (195 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   0.99 
At5g07940.1 68418.m00920 expressed protein                             27   2.3  
At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    26   3.0  
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    26   3.0  
At4g07524.1 68417.m01175 GTP-binding protein, putative similar t...    25   5.3  
At4g11840.1 68417.m01885 phospholipase D gamma 3 / PLD gamma 3 (...    25   7.0  
At4g11830.2 68417.m01884 phospholipase D gamma 2 / PLD gamma 2 (...    25   7.0  
At4g11830.1 68417.m01883 phospholipase D gamma 2 / PLD gamma 2 (...    25   7.0  
At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative / phos...    25   7.0  
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa...    25   9.2  

>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 29  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 181
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At5g07940.1 68418.m00920 expressed protein
          Length = 1526

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 61  NVSLQDKRCRRSVCGAPEKGFIPFP 135
           N+S QDK C+    G  EK F+  P
Sbjct: 393 NISAQDKFCQMEDSGPAEKSFMKVP 417


>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 14  LAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY 169
           +AG +A + S+  +P  YH   K  + +  E+ +  +S F     +NVD  +
Sbjct: 490 IAGALAYLHSAASTP-VYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTH 540


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 14  LAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY 169
           +AG +A + S+  +P  YH   K  + +  E+ +  +S F     +NVD  +
Sbjct: 527 IAGALAYLHSAASTP-VYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTH 577


>At4g07524.1 68417.m01175 GTP-binding protein, putative similar to
           GTP-binding protein [Pisum sativum]
           gi|303736|dbj|BAA02109
          Length = 70

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 60  KRITSRQKMSTQCLWSARKRFYPFS 134
           + IT + K+    +W +RK F PFS
Sbjct: 18  RTITLQGKLVKDQIWESRKSFIPFS 42


>At4g11840.1 68417.m01885 phospholipase D gamma 3 / PLD gamma 3
           (PLDGAMMA3) identical to phospholipase D gamma 3
           sp:Q9T052 from [Arabidopsis thaliana]
          Length = 866

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 38  QSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVN 154
           +S V +  T+H KT  VDA   + ++K+++    +D  N
Sbjct: 366 KSEVETIYTHHQKTMIVDAEAAQNRRKIVAFVGGLDLCN 404


>At4g11830.2 68417.m01884 phospholipase D gamma 2 / PLD gamma 2
           (PLDGAMMA2) identical to SP|Q9T051 Phospholipase D gamma
           2 (EC 3.1.4.4) (AtPLDgamma2) (PLD gamma 2) [Arabidopsis
           thaliana]
          Length = 856

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 38  QSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVN 154
           +S V +  T+H KT  VDA   + ++K+++    +D  N
Sbjct: 357 KSEVETIYTHHQKTMIVDAEAAQNRRKIVAFVGGLDLCN 395


>At4g11830.1 68417.m01883 phospholipase D gamma 2 / PLD gamma 2
           (PLDGAMMA2) identical to SP|Q9T051 Phospholipase D gamma
           2 (EC 3.1.4.4) (AtPLDgamma2) (PLD gamma 2) [Arabidopsis
           thaliana]
          Length = 824

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 38  QSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVN 154
           +S V +  T+H KT  VDA   + ++K+++    +D  N
Sbjct: 325 KSEVETIYTHHQKTMIVDAEAAQNRRKIVAFVGGLDLCN 363


>At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative contains
           Pfam PF00650 : CRAL/TRIO domain and PF03765 : CRAL/TRIO,
           N-terminus; similar to polyphosphoinositide binding
           protein Ssh2p GB:AAB94599 GI:2739046 from [Glycine max]
          Length = 255

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 95  VFVERQKKVLSLFQDVDQVNVDDEY 169
           VFVE +K   +L +D+D+  + D Y
Sbjct: 219 VFVENKKLTPTLLEDIDESQLPDIY 243


>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
           family protein low similarity to polycomb-M33
           interacting protein Ring1B [Mus musculus] GI:2239142;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 427

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 107 RQKKVLSLFQDVDQVNVDDEYYKIGKD 187
           R++   ++ QD  + N DD+  K GKD
Sbjct: 230 RRRNCRNIEQDTSEANDDDDQNKRGKD 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,006,323
Number of Sequences: 28952
Number of extensions: 63768
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,070,560
effective HSP length: 44
effective length of database: 10,796,672
effective search space used: 215933440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)