Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F16
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0012 - 7346282-7347136,7347234-7347593 36 0.021
11_02_0014 - 7352619-7352918,7353173-7353418 34 0.11
11_02_0011 - 7337618-7338496,7338596-7338991 33 0.25
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 32 0.44
08_02_1427 - 27020819-27020918,27021017-27021081,27021160-270212... 31 1.0
04_03_0313 + 14233049-14234362,14234558-14235523 31 1.0
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 30 1.3
07_03_1547 + 27623945-27625612 29 2.4
01_06_0824 - 32243495-32244319,32244449-32244859 29 2.4
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 29 3.1
05_05_0023 + 21605803-21605917,21606054-21606148,21606261-216063... 29 4.1
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 28 5.4
04_03_1003 - 21631188-21631274,21631939-21632043,21632171-216322... 28 7.2
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 9.5
08_02_1094 + 24275719-24277029 27 9.5
02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209 27 9.5
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 543 GYSLVLINALYFKGNWRVKFPYEK 614
G +LVL+NA+YFKG W FP E+
Sbjct: 152 GTALVLVNAIYFKGKWSNPFPRER 175
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 549 SLVLINALYFKGNWRVKFPYE 611
+LVL+NA+YFKG W FP E
Sbjct: 116 TLVLVNAIYFKGKWSDPFPRE 136
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 549 SLVLINALYFKGNWRVKFP 605
+LVL+NA+YFKG W FP
Sbjct: 166 ALVLVNAIYFKGKWSNPFP 184
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +3
Query: 552 LVLINALYFKGNWRVKFPYEK 614
LVL NALYFKG W KF K
Sbjct: 496 LVLANALYFKGAWAEKFDVSK 516
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +3
Query: 552 LVLINALYFKGNWRVKFPYEK 614
LVL NALYFKG W KF K
Sbjct: 244 LVLGNALYFKGAWTEKFDASK 264
>08_02_1427 -
27020819-27020918,27021017-27021081,27021160-27021246,
27021398-27021466,27022168-27022219,27022443-27022525,
27022677-27022753,27022880-27023074,27023204-27023261,
27023862-27023956,27024605-27024758
Length = 344
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 580 LKYKALIKTKEYPIQITWCYYLIYSFVSCQSNEIIYSS 467
L Y ++ + P+ I W YYLI + ++N I+ S
Sbjct: 69 LIYGGILIYRRQPLTIKWYYYLILGIIDVEANYIVVKS 106
>04_03_0313 + 14233049-14234362,14234558-14235523
Length = 759
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 300 LKYFLLKHECGWSLNTTLISFRVSSVAPNDSADIIVHADSPDVTKWLSVFRLTRVTSSSV 121
L+Y + H C L +R+ S+ D+ + A SPDVTK +++ RL T+ ++
Sbjct: 586 LRYLDISHSCVKELPEKF--WRLYSLQVVDARRSSLRAISPDVTKLINLRRLALPTNCAL 643
Query: 120 KL 115
KL
Sbjct: 644 KL 645
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +3
Query: 552 LVLINALYFKGNWRVKFPYEK 614
LVL NALYFKG W KF K
Sbjct: 36 LVLGNALYFKGAWTEKFDASK 56
>07_03_1547 + 27623945-27625612
Length = 555
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 91 HIFEEVIVQLY---R*TCDSSQSKNGKPFRHIRTISMDDYIGAI 213
H F EVI L T D ++ GK RH RT+ D Y G I
Sbjct: 285 HCFPEVIAGLRIHGELTVDPEKTPEGKSIRHFRTLLDDAYRGRI 328
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +3
Query: 555 VLINALYFKGNWRVKF 602
VL NALYFKG+W KF
Sbjct: 173 VLGNALYFKGDWESKF 188
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 29.1 bits (62), Expect = 3.1
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Frame = +2
Query: 131 LVTRVNRKTESHFVTSGL--SAWTIISALSLGATDETLNEINVVLRLHPHSCFNRKYFNI 304
L+ ++R HFV L S W +++ + +TD N++ +V++ + Y +
Sbjct: 19 LLVALSRCASHHFVAMFLLVSDWWVVAMMQKKSTDNINNKLQLVMK---SGKYTLGYKTV 75
Query: 305 LKEIGENDGGVLKLSGAIFTDLKMSVYEQFKQDVQMTGVSKVNELPWDNNTATATAINDF 484
LK + + G ++ L+ L+ S E + M G V+ NN TA +
Sbjct: 76 LKTLRNSKGKLIILANNC-PPLRKSEIEYY----AMLGKVSVHHF-HGNNVDLGTACGKY 129
Query: 485 VRLATHEAID 514
R+ ID
Sbjct: 130 YRVCCLSIID 139
>05_05_0023 +
21605803-21605917,21606054-21606148,21606261-21606318,
21606458-21606652,21607001-21607080,21607182-21607247,
21607572-21607680,21608161-21608247,21608315-21608393,
21608490-21608622
Length = 338
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 592 LQFPLKYKALIKTKEYPIQITWCYYLIYSFVSCQSNEII 476
L L Y ++ + +QI W +YL +F+ Q N ++
Sbjct: 52 LLLTLVYVPILLKRRQKLQIPWYWYLALAFIDVQGNYLV 90
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 281 FNRKYFNILKEIGENDGGVLKLSGAIFTDLKMSVY-EQFKQD 403
F+ YF +KE + D VL A+F D VY E++ +D
Sbjct: 285 FDNSYFKDIKEQRDQDLLVLPTDAALFEDPSFKVYAEKYAED 326
>04_03_1003 -
21631188-21631274,21631939-21632043,21632171-21632248,
21632337-21632411,21632908-21632994,21633091-21633158,
21633478-21633565,21633684-21633784,21633831-21633990,
21635088-21635246,21635351-21635527
Length = 394
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 281 FNRKYFNILKEIGENDGGVLKLSGAIFTDLKMSVY-EQFKQD 403
F+ YF +KE + D VL A+F D VY E++ +D
Sbjct: 299 FDNSYFKEIKEKRDQDLLVLPTDAALFEDPTFKVYAEKYAED 340
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +3
Query: 378 VSTNSSNKTCK*QECLKLMNYLGTITRLPRLL*MISLDWQLTKL*MR**HQVIWMGYSLV 557
V + N C Q + L +YLGT+ R P L + L W H++ Y
Sbjct: 151 VKLDRFNIPCS-QSAIVLGSYLGTLVRKPHLAPLNILQWN---------HKLYKRAYHPK 200
Query: 558 LINALYFKGNWR 593
+I+ + G WR
Sbjct: 201 MISEVELDGKWR 212
>08_02_1094 + 24275719-24277029
Length = 436
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 122 TDELVTRVNRKTESHFVTSGLSAWTII 202
T V V RKT H + + +SAWT++
Sbjct: 207 TGPKVAGVARKTSPHVLAAAVSAWTLV 233
>02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209
Length = 455
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 46 NNEKFIRKLR*LLGSHIFEEVIVQLYR*TCDSSQSKNGKPFRHIRT 183
N+E IR +R ++ + + E I R C+ + KN +P R+ T
Sbjct: 373 NDENLIRYIRLVMDAAVNLEDIFLYKRMACEKCKGKNPRPLRYPST 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,234,454
Number of Sequences: 37544
Number of extensions: 278775
Number of successful extensions: 736
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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