Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F16
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      31   1.0  
SB_18694| Best HMM Match : SNF7 (HMM E-Value=0.46)                     29   2.4  
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)            29   3.2  
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)                  29   3.2  
SB_16232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_29473| Best HMM Match : CASP_C (HMM E-Value=6.5)                    29   4.2  
SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)          29   4.2  
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)                   28   7.4  
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      28   7.4  
SB_8982| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      28   7.4  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         28   7.4  
SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)              28   7.4  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   7.4  

>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 525 HQVIWMGYSLVLINALYFKGNWRVKFPYEKYAIQAHF 635
           H VI     L+++NA+YFKG W+ +F  E     A F
Sbjct: 119 HGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFF 155


>SB_18694| Best HMM Match : SNF7 (HMM E-Value=0.46)
          Length = 238

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 138 LESIEKRKAISSHQDYQHGRLYRRYH*ALLM 230
           + S EKR+++S  Q  +  RL ++YH  LLM
Sbjct: 58  IASEEKRRSVSEDQKKELSRLLKKYHKTLLM 88


>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
          Length = 679

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 138 LESIEKRKAISSHQDYQHGRLYRRYH*ALLM 230
           + S EKR+++S  Q  +  RL ++YH  LLM
Sbjct: 498 IASEEKRRSVSEDQKKELSRLLKKYHKKLLM 528


>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
          Length = 286

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 375 IFKSVNIAPESFKTPPSFSPISFKILKYFLLKHEC---GW 265
           +++  +IAP+S+  P +F+P++  +  Y L+ H     GW
Sbjct: 32  VYRRASIAPQSYGAPFAFAPLNPMVSAYPLMGHRVQPYGW 71


>SB_16232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 138 LESIEKRKAISSHQDYQHGRLYRRYH*ALLM 230
           + S EKR+++S  Q  +  RL ++YH  LLM
Sbjct: 311 IASEEKRRSVSEDQKKELSRLLKKYHKKLLM 341


>SB_29473| Best HMM Match : CASP_C (HMM E-Value=6.5)
          Length = 389

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 499 SCQSNEIIYSSRGSRVIVPR*FINFRHSCHLHVLFELFVDT 377
           S QS + I  SR    + PR  +N    CH++  FE  V+T
Sbjct: 315 SNQSRDSIVHSRDHSTVTPRDHLNPEPRCHVNSTFEEEVET 355


>SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)
          Length = 737

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 394 ELFVDTHFQISKYRTGKF*DTAIVFTNFF*NI 299
           ++FVD   +++KY  GK  D + V  NFF N+
Sbjct: 302 QVFVDLFQELNKYYDGKNMDLSQVMNNFFANL 333


>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
          Length = 557

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 267 WSLNTTLISFRVSSVAPNDSADIIVHADSPDVTKWLS 157
           W LNT L+SF +S +  + S D+     +   T+++S
Sbjct: 186 WMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVS 222


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 552 LVLINALYFKGNWRVKF 602
           L L+NA+YFKG+W   F
Sbjct: 160 LCLVNAVYFKGSWMKHF 176


>SB_8982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 432

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
 Frame = -3

Query: 444 QGNSLTLDTPVICTSCLNCS*TLIFKSVNIAPES---FKTPPSFSPISFKILKYFLL--- 283
           + + LT+ T   C+SC  C      KS+  A  S     +PP  S     +  +F L   
Sbjct: 349 EAHRLTVPTVRNCSSCSTCGRLQTLKSIGGAARSTSFLVSPPGLSHKQLLLSSFFSLDPA 408

Query: 282 -KHECGWSLNTTLISFR 235
            K EC   L    +SF+
Sbjct: 409 IKRECLVYLGWLYVSFK 425


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 552 LVLINALYFKGNWRVKFPYE 611
           L L+NA+YFKG W   F  E
Sbjct: 123 LTLVNAIYFKGMWDKPFKKE 142


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 267 WSLNTTLISFRVSSVAPNDSADIIVHADSPDVTKWLS 157
           W LNT L+SF +S +  + S D+     +   T+++S
Sbjct: 346 WMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVS 382


>SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)
          Length = 398

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +2

Query: 86  AHTFLKRSLYNFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDETLNEINVVLRL 265
           A   L+R++    DE    V+++T+     +  S +   + L++     T+ +++ V+ L
Sbjct: 280 ARALLRRNVILIIDEATAHVDQRTDVLIQKTIRSKFKDCTVLTIAHRLNTIMDMDRVMLL 339

Query: 266 HPHSCFN 286
           +P +C N
Sbjct: 340 NPCTCLN 346


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 336 TPPSFSPISFKILKYFLLKHECGWSLNTTLISFRVSSVAPND-SADIIVHADSPDVTKW 163
           TP  F+P+  KIL+Y L+K++    +  TL + R  S+  ND    ++++ D      W
Sbjct: 294 TPEHFTPLVGKILRYLLMKNK---GIPQTL-ALRHGSILNNDIGCVLMMNGDCQVARNW 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,263
Number of Sequences: 59808
Number of extensions: 348959
Number of successful extensions: 907
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)