Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F15
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated p...    29   3.5  
U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated p...    29   3.5  
AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.     29   3.5  

>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +2

Query: 167 CEPLLNLFRNKSRTAEDKKLLGDSQC--GYENNIPMVCCPIS-NACKTPDDKPGICVGLY 337
           C+ L+ L   K+  +E ++   +  C  GYE N    CCP S NAC     +   C G  
Sbjct: 424 CDGLVPL---KNPNSELQRCSEEDPCPAGYECNDSSYCCPSSENACNANMSRGNGCKG-- 478

Query: 338 NCEHITYMMLDKTRKSKMDYVRQSVCNGPETFS 436
                +    DK++K    +V       P  F+
Sbjct: 479 -STQRSMWFYDKSKKKCSQFVYNGCGGTPNRFT 510


>U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated
           protein 78, isoform b protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 506 VTAFPLESNNECCGVEDTVVNKIVGGNDTKIHQY 607
           +T  P+  N+ C  + +      VGG D+K+H Y
Sbjct: 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475


>U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated
           protein 78, isoform a protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 506 VTAFPLESNNECCGVEDTVVNKIVGGNDTKIHQY 607
           +T  P+  N+ C  + +      VGG D+K+H Y
Sbjct: 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475


>AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 506 VTAFPLESNNECCGVEDTVVNKIVGGNDTKIHQY 607
           +T  P+  N+ C  + +      VGG D+K+H Y
Sbjct: 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,273,922
Number of Sequences: 27780
Number of extensions: 302143
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)