Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F14
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    28   0.99 
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   4.0  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.0  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   9.2  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   9.2  

>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -2

Query: 492 HISCRRHFRRCTNRSWIVNGFFPNGIFSLWYPER 391
           H +    F  C N  W+V     + I  +W P R
Sbjct: 381 HTNRISEFSWCPNERWVVGSLADDNILQIWSPSR 414


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -2

Query: 492 HISCRRHFRRCTNRSWIVNGFFPNGIFSLWYPERA 388
           H SC      C N +W +     + I  +W P R+
Sbjct: 381 HTSCTIDMDWCPNYNWTMATAAEDNILQIWTPSRS 415


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 98  YLCSVHFYGRRFENETNDSVRAGDE 172
           YLCSVH   +  E ETN+  +  D+
Sbjct: 63  YLCSVHEAKKWLEEETNNEYQNLDD 87


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
 Frame = -1

Query: 217 TFTVS--SSVLFCISRNF--VSG-TNTVICF 140
           TFT S  SS+LF +S+NF  + G  N + CF
Sbjct: 4   TFTKSDGSSILFAVSKNFEHIRGFKNAIDCF 34


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 24  ASSDPLKMHRALRIIKTNTDISGDYTCVVSTFMDEDS 134
           A+S+  K   A    KTN D+  D + +V+ F+  DS
Sbjct: 247 ANSENNKGSEAGVSAKTNPDMDSDSSAIVNEFLKPDS 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,866
Number of Sequences: 5004
Number of extensions: 45775
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)