Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F14
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    30   1.3  
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189...    29   2.3  
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029     28   4.0  
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426...    28   5.3  
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176...    28   5.3  
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160...    27   9.3  
03_01_0193 + 1541884-1543064,1543153-1544647                           27   9.3  

>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 262  WPHRKDGWT-RVSHNLKLVDGRYSAVATVTLNDADLPSPAEFICTLWIPQAKYAV 423
            W      WT R+ H LK V    + V  ++  D  +   + ++C ++ P+ +Y+V
Sbjct: 1894 WSDSSQEWTERMKHKLKHVPQSKNGVFWMSWQDFQIHFRSIYVCRVYPPEMRYSV 1948


>07_01_0253 +
           1888831-1889399,1890121-1890526,1890980-1891195,
           1891441-1891548,1892085-1892359,1892462-1892714
          Length = 608

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 346 TLNDADLPSPAEFICTLWIPQAKYAVRKEAIY-YPGPISTTPEMPTAADMQLAAA 507
           T +  +LP PA    T  +   + ++     Y +PG + ++P +P  AD  LAAA
Sbjct: 46  TTHYPNLPPPAPPPSTSLVAAEEASLAPRRTYRFPGSVPSSPTLPDTADGGLAAA 100


>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
          Length = 677

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 315 GWQIFRG-SNRYPQRCRFTIACGIHLHALDTTS*ICR 422
           GWQ F G S     RCR ++  G+H + +  TS I R
Sbjct: 94  GWQNFAGPSCSGIARCRTSVGRGVHSYTIQVTSLIDR 130


>03_04_0161 +
           17838466-17838551,17842379-17842445,17842537-17842662,
           17842756-17842886,17843121-17843220,17843334-17843466,
           17843500-17843544,17843545-17843608,17843692-17844469,
           17844897-17845229,17845427-17845634,17845733-17845809,
           17846168-17846240,17846343-17846413,17846597-17846716,
           17846815-17846879,17846974-17847124
          Length = 875

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 12  LTYRASSDPLKMHRALRIIKTNTDISGDYTCV 107
           LT   S +PL M RALR  KTN D+  ++  V
Sbjct: 469 LTSGLSWEPLVMWRALREKKTNGDVEDEHFAV 500


>01_05_0510 -
           22816607-22816916,22817005-22817177,22817341-22817607,
           22817951-22818393,22818474-22818635,22820991-22821414,
           22823177-22823227
          Length = 609

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 286 TRVSHNLKLVDGRYSAVATVTLND 357
           +R++H + +VDG +  V  VTL D
Sbjct: 551 SRITHRIYVVDGDFEVVGVVTLRD 574


>03_06_0407 -
           33714563-33714636,33714966-33715152,33715943-33716093,
           33716520-33716632,33717022-33717085,33717180-33717391,
           33717540-33717621,33717811-33717866,33718004-33718072,
           33718524-33718772,33718873-33719049,33719556-33719702,
           33719794-33719926,33720093-33720307
          Length = 642

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 298 HNLKLVDGRYSAVATVTLNDADLPSPAEFICTLWIPQAKYAVRKEAIYYPG 450
           H  KL+    +A A V     D P+  E + T W+P+ +    K  +   G
Sbjct: 75  HRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVG 125


>03_01_0193 + 1541884-1543064,1543153-1544647
          Length = 891

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 337 LPRNICHPPASNYAKRASSRLSGVASVRLGA 245
           LP  +C PP  +Y    S+ LSG  + +L A
Sbjct: 212 LPDQLCAPPEISYISVRSNSLSGAIAGKLNA 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,510
Number of Sequences: 37544
Number of extensions: 333520
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)