Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F14
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ...    29   1.5  
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa...    28   4.5  
At1g20760.1 68414.m02600 calcium-binding EF hand family protein ...    27   5.9  

>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
           SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
           contains Pfam profiles PF00226: DnaJ domain, PF01556:
           DnaJ C terminal region, PF00684: DnaJ central domain (4
           repeats)
          Length = 517

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 344 LPSTMPIYHRLRNSSARSGYHKLNMPLGKKPFTIQDLLVQRLKCLRQLICSSQRQLVQK 520
           LP T+PI+ R+R      GY +  + +         L V R   L++ I SS R+L +K
Sbjct: 32  LPPTLPIFSRVRRFGISGGYRRRVITMAAGTDHYSTLNVNRNATLQE-IKSSYRKLARK 89


>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 425

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -3

Query: 365 KSASLRVTVATAEYLPSTSFKLCETRVQPSFRCGQRKVRRGIHSF 231
           ++ SLR T+  + ++P+  F+  + R++     G+R+ R  ++ F
Sbjct: 218 RTESLRTTLNRSGHIPTEIFRHLQDRLERESSTGERRARPSLNRF 262


>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 1019

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 316 PPASNYAKRASSRLSGVASVRLGAG--YTPSAAQMTF 212
           PP  N   R +  +SG+ S+R  AG  Y PSA    F
Sbjct: 142 PPQQNQQMRPNQGISGLTSLRPAAGPEYRPSALSGQF 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,520,537
Number of Sequences: 28952
Number of extensions: 247555
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)