Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F13
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 37 0.016
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 31 1.0
SB_25200| Best HMM Match : RVT_1 (HMM E-Value=1.7) 31 1.0
SB_17286| Best HMM Match : RVT_1 (HMM E-Value=1.5e-05) 30 1.3
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_58039| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_57871| Best HMM Match : RVT_1 (HMM E-Value=0.0029) 29 2.4
SB_45859| Best HMM Match : RVT_1 (HMM E-Value=0.0014) 29 3.1
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 29 3.1
SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14) 29 3.1
SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075) 29 3.1
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 29 3.1
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 29 3.1
SB_43452| Best HMM Match : RVT_1 (HMM E-Value=0.0056) 29 3.1
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16) 29 3.1
SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08) 29 3.1
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 29 3.1
SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12) 29 3.1
SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097) 29 3.1
SB_27036| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 29 3.1
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07) 29 3.1
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14) 29 3.1
SB_1557| Best HMM Match : Keratin_B2 (HMM E-Value=5) 29 4.1
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 28 5.4
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 28 5.4
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 28 7.2
SB_54562| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06) 28 7.2
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 7.2
SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06) 28 7.2
SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20) 28 7.2
SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 28 7.2
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 28 7.2
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_4623| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 28 7.2
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14) 28 7.2
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_34709| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 28 7.2
SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13) 28 7.2
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_4973| Best HMM Match : RVT_1 (HMM E-Value=8.6e-11) 28 7.2
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 27 9.5
SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 27 9.5
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 36.7 bits (81), Expect = 0.016
Identities = 27/80 (33%), Positives = 38/80 (47%)
Frame = -1
Query: 262 DQQVMPLSRGGLRGGGEVFSSIPTGPLHGRGLVGSLQGATRCLRKPPRVAPIPNAADGPG 83
DQ+++P G+ G+ FS +G G+GL G QG + + P PN P
Sbjct: 559 DQRMVPFQNQGMNADGQ-FSDGRSG--FGQGLPGG-QGFSPGSQGTPSQGYTPNRLASPS 614
Query: 82 GF*WVFPSDFRPGESHTGTE 23
G+ PSD RPG S G +
Sbjct: 615 GY---GPSDSRPGSSQPGMD 631
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 129 SHPVSPPSQMQRTAPGGFSGYFRATFARVSPTLARSSSLRAP 4
SH +SPP++ R+ SG R T +PTL R+ +L AP
Sbjct: 435 SHRLSPPARAVRSQASSASGQARMTVEYETPTL-RTPTLSAP 475
>SB_25200| Best HMM Match : RVT_1 (HMM E-Value=1.7)
Length = 371
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP S R+T+A + P+QLAR +
Sbjct: 46 DLSPLNKYSQRETYAMESPFQLARRV 71
>SB_17286| Best HMM Match : RVT_1 (HMM E-Value=1.5e-05)
Length = 288
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+T+A + P+QLAR I TL + H V + H F+T
Sbjct: 76 DLSPLNKYCQRETYATESPFQLARRIPNDTWKTLTDAWNGYHSVPLRSSDRHLTTFIT 133
>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1222
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+T+A + P+QLAR I T+ + H V + H F+T
Sbjct: 630 DLSPLNKYCQRETYATESPFQLARRIPNDTWKTVTDAWNGYHSVRLRSSDRHLTTFIT 687
>SB_58039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 197 PYRAIARTRPGGFAAGGDAVPA--KATPCRP 111
PY I T GG A GGD +P+ ++ CRP
Sbjct: 2 PYGIIVLTVGGGVACGGDVLPSMEQSNSCRP 32
>SB_57871| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
Length = 195
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHIC---LVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+T+A + P+QLAR I T+ + H V + H F+T
Sbjct: 16 DLSPLNKYCQRETYATESPFQLARRIANDTWKTVTDAWNGYHSVPLRSSDRHLTTFIT 73
>SB_45859| Best HMM Match : RVT_1 (HMM E-Value=0.0014)
Length = 471
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 323 DLSPLNKYCQRETYATESPFQLARRI 348
>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
Length = 1590
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 671 DLSPLNKYCQRETYATESPFQLARRI 696
>SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 208 DLSPLNKYCQRETYATESPFQLARRI 233
>SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 644 DLSPLNKYCQRETYATESPFQLARRI 669
>SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)
Length = 1447
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 639 DLSPLNKYCQRETYATESPFQLARRI 664
>SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)
Length = 310
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +3
Query: 33 VWDSPGRKSLGNTH*NPPGPSAAFGMGATRGGFRRHRVAPCSEPTRPRPC 182
+W+S +K L NP G F + + RVA P R R C
Sbjct: 13 LWESKLKKGLSTESGNPSGEKQVFPLSGAKLAVGYTRVAVYGTPARSRGC 62
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 376 DLSPLNKYCQRETYATESPFQLARRI 401
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 400 DLSPLNKYCQRETYATESPFQLARRI 425
>SB_43452| Best HMM Match : RVT_1 (HMM E-Value=0.0056)
Length = 437
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 182 DLSPLNKYCQRETYATESPFQLARRI 207
>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 913
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 16 DLSPLNKYCQRETYATESPFQLARRI 41
>SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08)
Length = 1201
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 673 DLSPLNKYCQRETYATESPFQLARRI 698
>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
Length = 1253
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 659 DLSPLNKYCQRETYATESPFQLARRI 684
>SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12)
Length = 1067
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 597 DLSPLNKYCQRETYATESPFQLARRI 622
>SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097)
Length = 812
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 731 DLSPLNKYCQRETYATESPFQLARRI 756
>SB_27036| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1059
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 573 DLSPLNKYCQRETYATESPFQLARRI 598
>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
Length = 493
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 228 DLSPLNKYCQRETYATESPFQLARRI 253
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 654 DLSPLNKYCQRETYATESPFQLARRI 679
>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
Length = 865
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI 380
DLSP R+T+A + P+QLAR I
Sbjct: 120 DLSPLNKYCQRETYATESPFQLARRI 145
>SB_1557| Best HMM Match : Keratin_B2 (HMM E-Value=5)
Length = 263
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 153 CSEPTRPRPCNGPVGMEENTSPPPLSPPL 239
C +P PC P + + PPP +PP+
Sbjct: 115 CCDPMMTNPCMNPCA-PQGSPPPPAAPPI 142
>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -1
Query: 196 PTGPLHGRGLVGSLQGATRCLRKPPRVAPIPNAADGPGG 80
P GP G GLVGS GA + PP P PGG
Sbjct: 190 PPGP-PGPGLVGSGSGAGAVIAGPPGPPGPPGPPGPPGG 227
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +1
Query: 13 EGRTPCQCGTH-PGESRSEIP-TKTPRGRPLHLGWGRHGVAFAGTASPPAANP 165
EGR P G PG R P ++PRG P+ G+ R + PP P
Sbjct: 496 EGRPPLDPGRPGPGRGRGYPPGDRSPRGVPISPGFDRREEFWRERPGPPENRP 548
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +1
Query: 13 EGRTPCQCGTH-PGESRSEIP-TKTPRGRPLHLGWGRHGVAFAGTASPPAANP 165
EGR P G PG R P ++PRG P+ G+ R + PP P
Sbjct: 262 EGRPPLDPGRPGPGRGRGYPPGDRSPRGVPISPGFDRREEFWRERPGPPENRP 314
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 100 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 157
>SB_54562| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06)
Length = 909
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 408 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 465
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 634 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 691
>SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06)
Length = 817
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 452 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 509
>SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20)
Length = 745
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 428 VDRMDERRLTKQSYKANVTSKLVRVVLGERISTRLRTFWRKVRLKEPVH 282
V + DER TKQ YK + +++G I TRL T + K P H
Sbjct: 645 VRKADER--TKQKYKKSFDXXXX-LIMGREIRTRLPTLTDNLHPKTPNH 690
>SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 795
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 489 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 546
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 272 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 329
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 494 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 551
>SB_4623| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 452
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 202 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 259
>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
Length = 707
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 122 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 179
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 582 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 639
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 100 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 157
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 162 PTRPRPCNGPVGMEENTSPPPLSPPLERGMT 254
PT P P P + + PPP++PP E G T
Sbjct: 642 PTGPPPPKPPRTLPQGV-PPPVTPPEEDGFT 671
>SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 656 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 713
>SB_34709| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 436
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 254 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 311
>SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13)
Length = 776
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 474 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 531
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 120 RGGFRRHRVAPCSEPTRPRPCNGPVGMEENTSPPPLSPPLERGMTCWSTIRGGRMYG 290
+G + ++ V P + +P NGP + +S P PP RG + ++ R+ G
Sbjct: 699 QGSYPQYHVPQQQYPGQQQPVNGPPHL---SSVPQPQPPTSRGGRASNALKDSRIRG 752
>SB_4973| Best HMM Match : RVT_1 (HMM E-Value=8.6e-11)
Length = 296
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR I T+ + H V + + H F+T
Sbjct: 46 DLSPLNKFCQRETFAMESPFHLARRIPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 103
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHI---CLVTLFRQSSFIHPVHVTKPTNHTFIFVT 467
DLSP R+TFA + P+ LAR + T+ + H V + + H F+T
Sbjct: 639 DLSPLNKFCQRETFAMESPFHLARRVPKDTWKTVTDAWNGYHSVPLREADRHLTTFIT 696
>SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 282 SCPPGLLTSRSCLFQEAG*EVEGKYSPPSLPGHCTDEAWWVR 157
+CP +LTS+ F+ +YSP + H D+ + R
Sbjct: 355 NCPTAILTSKRSAFEPISSVSGSRYSPYEVKEHAEDDERYYR 396
>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 1405
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHICLVT 392
DLSP R+TFA + P+ LAR + + T
Sbjct: 582 DLSPLNKFCQRETFAMESPFHLARRVPMDT 611
>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1441
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 303 DLSPERPQSGRDTFA*DDPYQLARHICLVT 392
DLSP R+TFA + P+ LAR + + T
Sbjct: 621 DLSPLNKFCQRETFAMESPFHLARRVPMDT 650
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,346,741
Number of Sequences: 59808
Number of extensions: 566011
Number of successful extensions: 1781
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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