Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F13
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical ...    31   0.51 
AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical ...    31   0.51 
AF077541-3|AAM54172.1|  750|Caenorhabditis elegans Alpha-catulin...    31   0.90 
AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    30   1.2  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   2.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   2.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   2.1  
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    29   2.7  
Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U88167-5|AAB42227.1|  107|Caenorhabditis elegans Hypothetical pr...    27   8.4  
M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.     27   8.4  
AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    27   8.4  
AF100656-8|AAF99965.1|  210|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    27   8.4  

>AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical
           protein E02D9.1b protein.
          Length = 315

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 238 RGGLRGGGEVFSSIPTGPLHGRGLVGSLQGATR 140
           RGG RGG   F   P GP+ GRG +G + G  R
Sbjct: 274 RGGFRGGRGGFGG-PGGPMGGRGGMGGMGGRGR 305


>AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical
           protein E02D9.1c protein.
          Length = 317

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 238 RGGLRGGGEVFSSIPTGPLHGRGLVGSLQGATR 140
           RGG RGG   F   P GP+ GRG +G + G  R
Sbjct: 274 RGGFRGGRGGFGG-PGGPMGGRGGMGGMGGRGR 305


>AF077541-3|AAM54172.1|  750|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform d protein.
          Length = 750

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 311 SRTSSIWSRYVRLGRPLPACSSHLPCNFVSSI 406
           SR S++W R   + R  P  SSHL  N  SSI
Sbjct: 717 SRESTVWRRTPSIRRAAPPTSSHLSANNSSSI 748


>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 150 PCSEPTRPRPCNGPVGMEENTSPPPLSPPLERGMTC 257
           PC  P  P PC GP       +PPP +P L   +TC
Sbjct: 145 PCFGPACPPPCFGPA-----CAPPPPAPILFGSVTC 175


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = -2

Query: 204 PPSLPGH--CTDEAWWVRCRGRRGACESHPVSPPSQMQRTAPGGFSGYFRATFARVSPTL 31
           PP  PGH        + +  G       HP  PP  M   +PG + G+ R       P  
Sbjct: 467 PPQFPGHPGMDPNYHYYQQHGMMPPHPGHPGYPPQHMNAFSPGQYPGHQRPPGGPGGPP- 525

Query: 30  ARSSSLRAPL 1
               ++RAP+
Sbjct: 526 PGPQAMRAPM 535


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 87  GPSAAFGMGA-TRGGFRRHRVAP-CSEPTRPRPCNGPVGMEENTSPPPLSPP 236
           G    FG    T+ GFR  R AP    P  P P  G   +  + SPPP  PP
Sbjct: 210 GQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPP--PP 259


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 87  GPSAAFGMGA-TRGGFRRHRVAP-CSEPTRPRPCNGPVGMEENTSPPPLSPP 236
           G    FG    T+ GFR  R AP    P  P P  G   +  + SPPP  PP
Sbjct: 231 GQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPP--PP 280


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 87  GPSAAFGMGA-TRGGFRRHRVAP-CSEPTRPRPCNGPVGMEENTSPPPLSPP 236
           G    FG    T+ GFR  R AP    P  P P  G   +  + SPPP  PP
Sbjct: 216 GQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPP--PP 265


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
 Frame = -2

Query: 312  EKGQVKRTRTSCPPGLLTSRSCLFQEAG*EVEGKYSPPSLPGHCTDEAWWVRCRGRR-GA 136
            E+GQ  + R     G L S     Q    +  G+ +P +LP        W   + +  GA
Sbjct: 1454 EQGQETQDRNPDQGGWLKSIQSTVQNTVQKATGR-NPMNLPEDRNPSIVWDSTQNKYVGA 1512

Query: 135  -CESHPVSPPSQMQRTAP------GGFSGYFRATFARVSPTLARSSSLRAP 4
              E  PV+PP  M +  P      GG      + +ARV  T   SS+ +AP
Sbjct: 1513 GVEQEPVAPPPPMAQAGPAPPVGGGGLRAARASRYARVGGT--SSSASQAP 1561


>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 84  PGPSAAFGMGATRGGFRRHRVAPCSEPTRPRPC 182
           PGP+   G     G   R   APC EP  P PC
Sbjct: 186 PGPNGKAGANGLNGNPGRPPEAPC-EPVTPPPC 217


>Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical
           protein C15A11.1 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
 Frame = +3

Query: 81  PPGPSAAFGMGATRGGFRRHRVAPCSEPTRPRPCN--GPVGMEENTSPPPLSPP 236
           PPGP    G     G          +EP  P P    GP G     +  P SPP
Sbjct: 155 PPGPDGQPGAPGPNGQPGAAGTTSTNEPGSPGPAGPPGPAGPAGEDAAAPESPP 208


>U88167-5|AAB42227.1|  107|Caenorhabditis elegans Hypothetical
           protein D2092.8 protein.
          Length = 107

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = +3

Query: 105 GMGATRGGFRRHRVAPCSEPTRPRP--CNGPVGMEENTSPPPLSP 233
           G+G   GG      +PC+ P  P P  C G  G     + P  +P
Sbjct: 21  GLGGLGGGCGGAAASPCAAPPMPPPVSCGGGCGAAPYPAGPMAAP 65


>M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
 Frame = +3

Query: 81  PPGPSAAFGMGATRGGFRRHRVAPCSEPTRPRPCNGP---VGMEENTSPP-PLSPPLERG 248
           PPGP+   G    +G   R   A C  P  PR   G     G      PP P  PP   G
Sbjct: 166 PPGPTGGQGGPGEQGDAGRPGAAGCPGPPGPRGEPGTEYRPGQAGRAGPPGPRGPPGPEG 225


>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/59 (30%), Positives = 22/59 (37%)
 Frame = -3

Query: 260 PAGHASFKRRAKRWRGSILLHPYRAIARTRPGGFAAGGDAVPAKATPCRPHPKCSGRPR 84
           P GH   +  A R R   +L   R  A         GG    A  TP  P P+   +PR
Sbjct: 485 PLGHKDAQEHAARLRAIAILKAKRKEAEMEKLTGGGGGVKRKASGTPTAPEPEAK-KPR 542


>AF100656-8|AAF99965.1|  210|Caenorhabditis elegans Hypothetical
           protein F49F1.9 protein.
          Length = 210

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +3

Query: 120 RGGFRRHRVAPCSEPTRPRPCNGPV-GMEENTSP--PPLSPPLERGMTCWSTIRGGRMYG 290
           RGG R     P   P  PRP   PV  ME    P  P +  P+  G   W+T +  R YG
Sbjct: 44  RGGGRHRPPRPPRPPRPPRPTPKPVENMETLHGPFGPGVRYPIPGGY--WATGKVLRFYG 101


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -1

Query: 244 LSRGGLRGGGEVFSSIPTGPLHGRGLVGSLQGATRCLRKPPRVAPIPNAADGPGG 80
           L  G    GG+  ++ P G   G    G+   A       P+ AP P AA  P G
Sbjct: 305 LGAGAYPEGGDAAAAAPAGGYDGGA--GAAPEAAPAAAAAPQPAPAPAAAAAPAG 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,101,812
Number of Sequences: 27780
Number of extensions: 411366
Number of successful extensions: 1523
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)