Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F12
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   3.1  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   4.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   5.4  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   5.4  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   9.5  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 73  FFLQNPNYFPRKLSLSNSVRV 11
           +FL+N NY P    L++S+RV
Sbjct: 405 YFLENYNYIPDSNGLNHSIRV 425


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 442 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGN 537
           N  V  DG +  VVI  P   F+ P+N  S N
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSAN 432


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 114 IVGLYKRGFMNCNQTENVDTLISIIM 191
           +V LYK G ++ NQT+ +  +++ I+
Sbjct: 311 LVTLYKAGILSKNQTKEIQMIVTPIL 336


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 394 VHYNPDYYPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSG 534
           VHY P YY   VH++       DG++    I   D    +  N P G
Sbjct: 234 VHYLPSYYHLHVHILHVDHETGDGSAVGRAIL-LDDVIDRLRNSPDG 279


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 238 PMIYNGYDKAKN*VVSMIMLIKVSTFSV*LQFIKPLLYKPTILRLRFMGSLLRFNFFL-- 65
           P  YN  +  +  VV +      S F++   ++ P +YKP+ + +  + SLL ++  L  
Sbjct: 511 PYKYNRIENLQM-VVGVRASASGSFFAIRNDYLPPPIYKPSNMLIDLLRSLLPYDHLLHV 569

Query: 64  QNPNYFP 44
           + P   P
Sbjct: 570 RQPRLIP 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,906
Number of Sequences: 5004
Number of extensions: 39103
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)