Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F12
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801...    34   0.062
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203...    29   1.8  
05_01_0159 - 1079089-1079091,1079312-1079572                           28   4.1  
12_02_1131 - 26358339-26360609                                         28   5.4  
07_03_0380 + 17460078-17460782,17461194-17461252,17461388-174614...    28   5.4  

>09_02_0511 -
           10079180-10079355,10079656-10079722,10080144-10080181,
           10080255-10080336
          Length = 120

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 373 NPGQVHVVHYNPDYYPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 525
           N G V+ V    + +PG   +++N+G  S GN   ++  N  PFF   SNG
Sbjct: 37  NGGMVYDVTSYVEEHPGGDEILNNAGATSKGNYALILPVNEFPFFLVYSNG 87


>02_04_0039 -
           19118632-19118820,19119018-19119395,19120151-19120345,
           19120425-19120502,19120567-19120752,19120828-19121058,
           19121137-19121490,19121588-19121785,19121869-19122039,
           19122156-19122263,19122362-19122580,19122665-19122871,
           19122978-19123196,19123315-19123389,19123749-19123901
          Length = 986

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +1

Query: 340 RVHVVDHNPDYNPGQVHVVHYNPDYY--PGQVHVVDNSGVPSDGNSDHVVIA 489
           R+  VD  P  N     V+ Y   +   P Q    D S +PS GN   + IA
Sbjct: 460 RISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGINIA 511


>05_01_0159 - 1079089-1079091,1079312-1079572
          Length = 87

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 478 RGHYCRPMEHHYCPPREPGLDNSQGCNGLRAPGLDYNQGYDRPR 347
           RGH  R +    CP   PG++   G  G R PG++   G   PR
Sbjct: 20  RGHLPRVVT---CPRAVPGVEEEDGGVGGRYPGVEEENGGGFPR 60


>12_02_1131 - 26358339-26360609
          Length = 756

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 442 CPPREPGLDNSQGCNGL 392
           CPP+ P +D+ +GC GL
Sbjct: 524 CPPKIPEVDDGRGCAGL 540


>07_03_0380 +
           17460078-17460782,17461194-17461252,17461388-17461492,
           17461732-17461867,17461919-17461939
          Length = 341

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 370 YNPGQV-HVVHYNPDYYPGQVHVVDNSGVPSDGNSDHVVIA 489
           Y PG++ H+V   P +  G+   V  + VP DG  +H+V++
Sbjct: 275 YAPGRLYHIVERKP-FRCGRYPPVVRTAVPVDGRFEHIVLS 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,067,495
Number of Sequences: 37544
Number of extensions: 250233
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)