Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F12
(537 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.064
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08) 30 1.0
SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1) 30 1.0
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 2.4
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 27 9.7
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 34.3 bits (75), Expect = 0.064
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 460 PMEHHYCPPREPGLDNSQGCNGLRAPGLDYNQG 362
P HH CP R L GCNG+ P DY G
Sbjct: 3318 PFAHHICPNRTRVLLTMAGCNGVSHPPQDYVPG 3350
>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
Length = 816
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 463 RPMEHHYCPPREPGLDNSQGCNGLRAP 383
+P+ + Y P R PG + S NG+R+P
Sbjct: 192 QPLVNGYSPRRSPGAERSSPINGIRSP 218
>SB_49088| Best HMM Match : 2_5_RNA_ligase (HMM E-Value=3.1)
Length = 410
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 349 VVDHNPDYNPGQV--HVVHYNPDYYPGQVH 432
+ D PD+ PGQ+ H+ + PD P QVH
Sbjct: 380 IPDQIPDHIPGQIHCHIPYQIPDQIPDQVH 409
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 126 INLQSCACVLWVLYCVLIFSYRTLIIFHESFHCRIV 19
+ L +C +L L + + YRT +IF E F CRIV
Sbjct: 1649 VPLSACTVLLLYLNRIFVGLYRTFVIF-EPFICRIV 1683
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Frame = +1
Query: 358 HNPDYNPGQVHVV--HYN----PDYYPGQVHVVDNSGVP---SDGNSDHVVIANPDP-FF 507
H PD P VH H N PD +P VH+ D P D S V + P
Sbjct: 704 HTPDNQPSNVHTPDNHLNTVHTPDNHPSTVHIPDKQLSPVHTQDNQSSPVHTPDNQPSTV 763
Query: 508 SQPSNGPS 531
P N PS
Sbjct: 764 HTPDNQPS 771
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 337 NRVHVVDHNPDYNPGQVHVVHYNPDYYPGQVHVVDN 444
N ++ V H PD P VH PD P VH DN
Sbjct: 638 NHLNTV-HTPDNQPSTVHT----PDNQPSNVHTPDN 668
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 358 HNPDYNPGQVHVVHYNPDYYPGQVHVVDNS--GVPSDGNSDHV 480
H P++ PG H + N D YPG + NS G P GN HV
Sbjct: 1019 HRPEF-PGNPHSGNPNSDIYPGN-PLSGNSLPGNPLPGNPHHV 1059
>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1845
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 462 VRWNTTIVH---HVNLAWIIVRVVMDYVHLAWIIIRVMIDHVHSVCGS 328
VR +VH H+ + VR+V ++ HL + + V + H HS G+
Sbjct: 1524 VRVTVRLVHNRTHLGTVRVTVRLVHNHSHLGTVRVTVRLVHNHSHLGT 1571
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 462 VRWNTTIVH---HVNLAWIIVRVVMDYVHLAWIIIRVMIDHVHSVCGS 328
VR +VH H+ + VR+V ++ HL + + V + H HS G+
Sbjct: 1540 VRVTVRLVHNHSHLGTVRVTVRLVHNHSHLGTVRVTVRLVHNHSHLGT 1587
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 462 VRWNTTIVH---HVNLAWIIVRVVMDYVHLAWIIIRVMIDHVHSVCGS 328
VR +VH H+ + VR+V ++ HL + + V + H H+ G+
Sbjct: 1572 VRVTVRLVHNHSHLGTVRVTVRLVHNHTHLGTVRVTVRLVHNHTHSGT 1619
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 462 VRWNTTIVH---HVNLAWIIVRVVMDYVHLAWIIIRVMIDHVHSVCGS 328
VR +VH H+ + VR+V ++ HL + + V + H H+ G+
Sbjct: 1620 VRVTVRLVHNHTHLGTVRVTVRLVHNHTHLGTVRVTVRLVHNHTHLGT 1667
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 462 VRWNTTIVH---HVNLAWIIVRVVMDYVHLAWIIIRVMIDHVHSVCGS 328
VR +VH H+ + VR+V ++ HL + + V + H H+ G+
Sbjct: 1636 VRVTVRLVHNHTHLGTVRVTVRLVHNHTHLGTVRVTVRLVHNHTHLGT 1683
>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = -3
Query: 445 YCPPREPGLDNSQ-GCNG 395
+CPP EPGL Q CNG
Sbjct: 678 FCPPHEPGLVTLQVACNG 695
>SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.1 bits (57), Expect = 9.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 376 PGQVHVVHYNPDYY 417
P ++H+VHYN D Y
Sbjct: 38 PSEMHIVHYNSDLY 51
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 418 PGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQ 513
P VD+SGV D S +V A +P FSQ
Sbjct: 155 PLHSEAVDSSGVAGDQRSSLLVSATLNPLFSQ 186
>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 418 PGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQ 513
P VD+SGV D S +V A +P FSQ
Sbjct: 84 PLHSEAVDSSGVAGDQRSSLLVSATLNPLFSQ 115
>SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 132 FYINLQSCACVLWVLYCVL 76
FYI LQ ++W L CVL
Sbjct: 219 FYIALQEYRAIIWALVCVL 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,612,101
Number of Sequences: 59808
Number of extensions: 321838
Number of successful extensions: 795
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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