Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F12
(537 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 29 1.6
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen pro... 28 3.7
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 28 4.9
Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 27 6.5
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 27 6.5
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 27 6.5
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 27 6.5
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 27 6.5
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 27 6.5
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 27 6.5
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 27 6.5
AF039047-6|AAB94226.1| 186|Caenorhabditis elegans Hypothetical ... 27 8.6
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 466 CRPMEHHYCPPREPGLDNSQGCNGLRA-PGLDYNQGYDRPRALCL 335
C P H CPP PG+ G +G PGLD + G R + +
Sbjct: 100 CAPATSH-CPPGPPGIFGPPGEDGTPGEPGLDGDPGTTATRQMAM 143
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 436 PREPGLDNSQGCNGLRAPGLDYNQG 362
P EPGLD G R +DY G
Sbjct: 124 PGEPGLDGDPGTTATRQMAMDYTGG 148
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = -3
Query: 493 GSQ*QRGHYCRPMEHHYCPPREPGLDNSQGCNGLRAPGLDYNQGYDRPRA 344
GSQ G C + PP PG D S G +G G+ G D PRA
Sbjct: 130 GSQGGGGGCCGCGQSPPGPPGRPGSDGSPGSDG--EAGIPGRDGPDAPRA 177
>AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen
protein 56 protein.
Length = 321
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 436 PREPGLDNSQGCNGLRAPGLDYN 368
P +PGLD G +GL PG DYN
Sbjct: 107 PGKPGLDGEPGFDGL--PGRDYN 127
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 496 PGSQ*QRGHYCRPMEHHYCPPREPGLDNSQGCNGLRAPGLDYNQGYD 356
PG+ ++G RP + P EPG G G APG D G D
Sbjct: 187 PGNDGEKGEPGRPAQSTPSTPGEPGNPGDAGATG--APGDDGAPGRD 231
>Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical
protein T11B7.3b protein.
Length = 273
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 469 YCRPMEHHYCPPREPGLDNSQGCNGLRAPGLDYNQGYDRPRAL 341
+C+ CPP PG + G G PG + +G D P +L
Sbjct: 87 WCQCDSAPQCPPGPPGPQGAPGAPG--TPGENGPRGMDNPHSL 127
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 469 YCRPMEHHYCPPREPGLDNSQGCNGLRAPGLDYNQGYDRPRAL 341
+C+ CPP PG + G G PG + +G D P +L
Sbjct: 87 WCQCDSAPQCPPGPPGPQGAPGAPG--TPGENGPRGMDNPHSL 127
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 439 PPREPGLDNSQGCNGLRAPGLDYNQGYDRPRA 344
PP PG D G +G PG N G D P A
Sbjct: 116 PPGAPGSDGEDGADG--QPGAPGNDGPDGPAA 145
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 439 PPREPGLDNSQGCNGLRAPGLDYNQGYDRPRA 344
PP PG D G +G PG N G D P A
Sbjct: 178 PPGAPGSDGEDGADG--QPGAPGNDGPDGPAA 207
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 439 PPREPGLDNSQGCNGLRAPGLDYNQGYDRPRA 344
PP PG D G +G PG N G D P A
Sbjct: 115 PPGAPGQDGEDGADG--QPGAPGNDGPDGPAA 144
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 439 PPREPGLDNSQGCNGLRAPGLDYNQGYDRPRA 344
PP PG D G +G PG N G D P A
Sbjct: 115 PPGAPGQDGEDGADG--QPGAPGNDGPDGPAA 144
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 439 PPREPGLDNSQGCNGLRAPGLDYNQGYDRPRA 344
PP PG D G +G PG N G D P A
Sbjct: 116 PPGAPGQDGEDGADG--QPGAPGNDGPDGPAA 145
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 439 PPREPGLDNSQGCNGLRAPGLDYNQGYDRPRA 344
PP PG D G +G PG N G D P A
Sbjct: 116 PPGAPGQDGEDGADG--QPGAPGNDGPDGPAA 145
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 439 PPREPGLDNSQGCNGLRAPGLDYNQGYD 356
P PG+D G NG PG D QG+D
Sbjct: 233 PAGAPGVDGQPGANG--QPGPDGEQGHD 258
>AF039047-6|AAB94226.1| 186|Caenorhabditis elegans Hypothetical
protein K11D12.6 protein.
Length = 186
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 466 CRPMEHHYCPPREPGLDNSQG 404
C P +HH CP P N+ G
Sbjct: 72 CIPQDHHVCPANTPSTLNTGG 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,469,389
Number of Sequences: 27780
Number of extensions: 232970
Number of successful extensions: 695
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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