Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F12
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +1

Query: 340  RVHVVDHNPDYNPGQVH----VVHYNPDYYPGQVH--VVDN-SGVPSDGNSDHVVIANPD 498
            R + +  +PD + GQ+H    VV Y      G +H  V  N     SDG   +V + +  
Sbjct: 897  RFYSISSSPDVHQGQIHLTVAVVQYKTQDGFGPIHYGVCSNYLREISDGEPLYVFVRSA- 955

Query: 499  PFFSQPS 519
            P F  PS
Sbjct: 956  PNFYMPS 962


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 84  CVLIFSYRTLIIFHESFHCRIVSEL 10
           C+ I++Y   +IF   F+ R++S +
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 84  CVLIFSYRTLIIFHESFHCRIVSEL 10
           C+ I++Y   +IF   F+ R++S +
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLSSI 247


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 408 RVVMDYVHLAWIIIRVMIDHVHSVC 334
           ++ +D     W++   +I++V SVC
Sbjct: 124 KIEIDMCDRLWVLDSGLINNVRSVC 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,080
Number of Sequences: 438
Number of extensions: 3038
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)