Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F12
         (537 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13770.1 68414.m01616 expressed protein contains Pfam domain,...    29   1.5  
At4g28690.1 68417.m04099 expressed protein                             27   6.0  

>At1g13770.1 68414.m01616 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647; contains
           non-consensus (GC) splice site at intron 2
          Length = 440

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 185 YHGYNSVLCFIISIVNHRQLILLIIHFINTFQ 280
           Y  Y +V C +++ +N  +  +L+ HFI T Q
Sbjct: 253 YANYRAVRCLVLNSLNFERSSILLTHFIQTGQ 284


>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 364 PDYNPGQVHVVHYNPDYYPGQVHVVDN--SGVPSDGNSDHVVIANPDPFFSQPSNG 525
           P +   Q   V  NP   P  +  + N  SG  +   S  VV +NP     +PSNG
Sbjct: 225 PGHRTEQSRTVQQNPGSQPHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNG 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,033
Number of Sequences: 28952
Number of extensions: 201136
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)