Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F11
         (523 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7ASE2 Cluster: Putative uncharacterized protein; n=1; ...    35   1.3  
UniRef50_A6FG45 Cluster: MSHA biogenesis protein MshQ; n=1; Mori...    32   6.9  
UniRef50_Q9RT21 Cluster: Trigger factor; n=2; Deinococcus|Rep: T...    32   9.2  

>UniRef50_A7ASE2 Cluster: Putative uncharacterized protein; n=1;
            Babesia bovis|Rep: Putative uncharacterized protein -
            Babesia bovis
          Length = 1024

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 121  LTSRGRTYTNKLSEFQAGKAAATASNIVV*YLFFINHRSI---IV*VTYIILCNRFACNI 291
            LTSR RTY+  +S       A   S +V+ Y+   + +++   I   +Y ILC  F+C  
Sbjct: 961  LTSRSRTYSILISLICFNILATLLSVVVISYMLVQSRQTVSKKIRMTSYNILCRLFSCQW 1020

Query: 292  RNTS 303
            RN+S
Sbjct: 1021 RNSS 1024


>UniRef50_A6FG45 Cluster: MSHA biogenesis protein MshQ; n=1;
           Moritella sp. PE36|Rep: MSHA biogenesis protein MshQ -
           Moritella sp. PE36
          Length = 1088

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
 Frame = +1

Query: 1   YRTHVEGFKFFCLSVCLLICFA*HAKTIDPNSMKVG-NDVE-------LTSRGRTYTNKL 156
           +R +   ++ F LS+CL + F+  A  +   SMKVG ND +       LT++     +KL
Sbjct: 14  FRFNTFTYQCFALSLCLFVAFSAGADVLLTGSMKVGDNDTKRIHPRYLLTAKDSRTNDKL 73

Query: 157 SEFQAGKA 180
            E QA  A
Sbjct: 74  EEPQASNA 81


>UniRef50_Q9RT21 Cluster: Trigger factor; n=2; Deinococcus|Rep:
           Trigger factor - Deinococcus radiodurans
          Length = 465

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 79  TIDPNSMKVGNDVELTSRGRTYTN-KLSEFQAGKAAATASNI 201
           T+DP  ++ G   E T +G TY   KL ++Q  K +A A  I
Sbjct: 90  TVDPQDVQSGQAFEFTVKGETYPEVKLGDWQGLKVSAQAPEI 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,635,357
Number of Sequences: 1657284
Number of extensions: 7985828
Number of successful extensions: 15368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15366
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)