Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F10
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    32   0.040
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    28   0.87 
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   3.5  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   6.1  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   6.1  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   8.1  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    25   8.1  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    25   8.1  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   8.1  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 32.3 bits (70), Expect = 0.040
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +2

Query: 113 DTKITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEY 292
           D KI    W+ V+ YES+   + L  G L+   ++ T   C      I G P+  R+  Y
Sbjct: 66  DIKIMSSEWIPVL-YESWVQGEDLDDGLLVDKHFLPTLFKCRVCLTNI-GQPERSRIENY 123

Query: 293 NTTNNGPDCMKGTKDCAH 346
              + G  C   T+D  H
Sbjct: 124 VLKHGGTFCPDLTRDVTH 141


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 164 FDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRL 283
           FDH K    G     K   ++ HC+   + I G  +NVR+
Sbjct: 280 FDHSKKKVIGRFQGVKGAPSSIHCLGNVVAITGLDRNVRI 319


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 264 RRRMCV*ESIIQQTMVRTA*KVPKTVHIP 350
           R+  CV ESI    ++ T  K+P T H+P
Sbjct: 31  RKSRCVVESIGNPCLLCTQLKIPCTYHLP 59


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 442 QPNKRNVMSALHIVGDVIWMWNSXFYRSSNNGMCTV-FGTFHAVRTI 305
           +P+K N+MS   + G +    N+  +R   +G+  V  G +++++ I
Sbjct: 567 KPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIVPRGNYYSIKNI 613


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 397 DVIWMWNSXFYRSSNNGMCTVFGTFHAVR 311
           D++W W   ++    N M  + G+F   R
Sbjct: 209 DIVWEWKEEYHNRIKNQMSRLGGSFDWTR 237


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 472 YKIXIRCCYHQPNKRNVMSALHIVGDVIWMWNSXFY 365
           Y I  RC   +   + +  +  IVG   W+W+S F+
Sbjct: 124 YHIMRRCIPDEHPAKRLCLSWAIVGMNAWVWSSVFH 159


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 330 VPFM-QSGPLFVVLYSPKRTFFGVPSI 253
           VP++ + G  F VLYSP+ T    P++
Sbjct: 239 VPYLTEIGQSFAVLYSPELTSLNFPNL 265


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 444 ISLISAMSCLPCTSLGM*SGCGIVXSIGAVT 352
           ISL++     P  S+ +  GCG+    GAVT
Sbjct: 157 ISLVAISHSAPLRSICL-LGCGVTTGFGAVT 186


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 265 RSFNQDCSSDTVCSSEHVLRT 203
           RSF Q CS++ +CS+E   R+
Sbjct: 472 RSFFQKCSAEFLCSNEPNFRS 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,441
Number of Sequences: 5004
Number of extensions: 45730
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)