Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F10
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381...    32   0.28 
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760     29   2.0  
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    27   6.1  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    27   6.1  

>10_01_0345 -
           3811057-3811236,3811342-3811615,3811732-3812289,
           3812602-3812747,3812930-3813097,3813896-3814003,
           3814859-3815029,3816557-3816949,3817522-3817617,
           3817715-3817774,3818600-3818744,3819296-3819520,
           3820106-3820254
          Length = 890

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 182 LCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEYNTTNNGPDCMK 325
           +C     + +Y  + A C     L+E  P+ +  G+Y +T   PDC K
Sbjct: 416 VCSQLFTTHQYTFSIACCFCNDYLLETRPERLGQGQYKSTLVCPDCKK 463


>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
          Length = 184

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = -1

Query: 381 GIVXSIGAVTTGCAQSLVPFMQSGPLFVVLYSPKRTFFGVPSIKIAPVTQCAAVSTYFEL 202
           G + ++ A T     + +P      L +  Y  +     VPS  I     C  V   F  
Sbjct: 58  GSITTVIATTVYLVWAYMPERCLRSLGITYYPSRYWALAVPSFVIVATALCMVVYVGFNF 117

Query: 201 MSEPPHSSF 175
           ++ PP +SF
Sbjct: 118 LATPPPTSF 126


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 178 AAMRW-LTHQFEVRAHCCTLC 237
           AA+RW LTH  E  A CC  C
Sbjct: 264 AAVRWGLTHHKESAADCCQAC 284


>01_06_0946 +
           33220910-33222221,33223373-33223734,33223863-33224073,
           33224174-33224411,33224492-33224642,33224733-33224997,
           33231775-33231820,33232167-33232815,33232883-33233384,
           33235023-33235360,33235466-33235676,33235769-33235992,
           33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 113 DTKITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTAAHCVTGAIL-IEGTPKN 274
           D  + +Y WL+  E  S D +  L GGS   S+ +     C+  A+L +E  P+N
Sbjct: 752 DLNLLRYSWLLWKEGRSVDLLDQLLGGSFDYSEVL----RCIQVALLCVEVQPRN 802


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,923,880
Number of Sequences: 37544
Number of extensions: 287699
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)