Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F10
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family prote...    32   0.24 
At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family prote...    29   2.2  
At1g28520.1 68414.m03506 expressed protein                             29   2.2  
At4g33380.1 68417.m04745 expressed protein                             27   5.1  
At4g33670.1 68417.m04783 L-galactose dehydrogenase (L-GalDH) ide...    27   6.8  
At1g74790.1 68414.m08665 expressed protein contains similarity t...    27   9.0  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    27   9.0  

>At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 263

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 65  SYILLISVNLIRARGNDTKITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 226
           +YI+    N+I        I  YP  +VIE E  DHM + C   L+S   +  A
Sbjct: 206 AYIVCKEDNIISEDHQRWMIHNYPANLVIEMEETDHMPMFCKPQLLSDHLLAIA 259


>At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 272

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 122 ITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 226
           I  YP  +VIE E  DH+ L C   L+S   +  A
Sbjct: 234 IDNYPPNLVIEMEGTDHLPLFCKPQLLSDHLLAIA 268


>At1g28520.1 68414.m03506 expressed protein
          Length = 486

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 242 GAILIEGTPKNVRLGEYNTTNNGPDCMKGTKDCAHPVVTAPIEXTI 379
           G +  E  P+N      NTTNN   C+KG    +  V T  ++ T+
Sbjct: 419 GRLTAEFPPEN---NTTNTTNNNKRCIKGRPKVSTKVATGNVQNTV 461


>At4g33380.1 68417.m04745 expressed protein
          Length = 328

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 178 AAMRW-LTHQFEVRAHCCTLC 237
           AA+RW LTH  E  A CC  C
Sbjct: 229 AAVRWGLTHHKESAADCCQAC 249


>At4g33670.1 68417.m04783 L-galactose dehydrogenase (L-GalDH)
           identical to L-galactose dehydrogenase [Arabidopsis
           thaliana] GI:16555790; similar to L-fucose dehydrogenase
           [Pseudomonas sp.] GI:829054; contains Pfam profile
           PF00248: oxidoreductase, aldo/keto reductase family
          Length = 319

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 146 PQAMDIG*FLCHFHVHESNLLILIEYMK 63
           P  +D+    CH+ V++S LL L+ Y+K
Sbjct: 173 PGTVDVILSYCHYGVNDSTLLDLLPYLK 200


>At1g74790.1 68414.m08665 expressed protein contains similarity to
           hedgehog-interacting protein GI:4868122 from [Mus
           musculus]
          Length = 695

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +1

Query: 340 CTSRCYCSYRXNYSTSRLHP----QRCARQT*HCAY*ADGNST 456
           CT RC C+   N   S+L P    Q C  QT    Y A+  S+
Sbjct: 299 CTGRCSCNSDVNCDPSKLTPDSGSQPCQYQTVIAEYTANSTSS 341


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes from
            this gene
          Length = 1035

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 140  LVVIEYESFDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEYN 295
            L+  ++ES   +   CG  LI  + V   A  V G I + G P    + +++
Sbjct: 923  LIEEDFESLKKVYCTCGEGLIPEEVVDREAETVEGVIQLMGQPTEQLMEDFS 974


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,275,203
Number of Sequences: 28952
Number of extensions: 235196
Number of successful extensions: 519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)