Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F09
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             28   5.3  
SB_1738| Best HMM Match : p450 (HMM E-Value=0)                         28   7.0  
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  
SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)                   27   9.3  

>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/136 (19%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
 Frame = +3

Query: 129 SITISASWSIEN-NINHYKNETAVKIWILMKKQNWLLPLSVPFSPLNPTHQFEAVIMFNV 305
           S+ +   +S+++ +      +  V++ +  K+Q  +  +++   P++ T++   V    V
Sbjct: 226 SVRLREGYSLQDVSFTKGGKQIEVRLTLPWKQQVQMEYVAIAAWPISSTNRVTRV---EV 282

Query: 306 LYSAKDYDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRSDLEGYAIPPIYEVLPEYSNNGE 485
             SA  Y+     T + K++ N    +     L +H   L+ ++  P Y  +P+ + NG 
Sbjct: 283 TVSAP-YEFLLDVTYHNKEQFNSGYRLQSNDELLVH---LQSFSSNPSYFTIPDSAKNGV 338

Query: 486 FLAYCPKDWSSRITHD 533
            L Y P +  +   H+
Sbjct: 339 PLFYLPPNSHNPTPHE 354


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 432 YAIPPIYEVLPEYSNNGEFLAYCPKDWSS 518
           YA+P  +  LP+Y  N E L Y   +W+S
Sbjct: 661 YAVPVFHNALPQYLKN-ELLLYKAAEWNS 688


>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +1

Query: 250 RFLH*IQHINLKLS*CSMSCIPLKTTTHSIKPQYT*KTVLTRTFTYMSSALYTFIVLT*K 429
           R LH + + + K +   +     K   H +   +T + +    +T+   ALYT+      
Sbjct: 305 RALHVLHYTHTKRALHELHYTHTKRALHVLHNTHTKRALQVLNYTHTKRALYTYYTTR-- 362

Query: 430 VTLFLQYMRFYRNIPITVNFWHT 498
            TL +QY  +Y    +TV+F ++
Sbjct: 363 -TLSVQY-TYYTTRTLTVHFTYS 383


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 457 FYRNIPITVNFWHTAQR--IGVHGSRMIEYYPSTYKWDNSVV 576
           +Y ++P     W +  R  +G+     + YY  T+ W++ VV
Sbjct: 515 YYNDLPNLPKVWKSKNRESVGLLWLGFLRYYTETFDWEHDVV 556


>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
          Length = 484

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 526 VIRELQSFGQYAKNSPLLEYSGKTSYI 446
           +I+EL   G    NSPL EYS K  Y+
Sbjct: 318 LIQELDLAGSNRGNSPLYEYSQKIDYL 344


>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
 Frame = +1

Query: 271 HINLKLS*CSMSCIPLKTTTHSIKPQYT*KTVLTRTFTYMSSALYTFIVLT*-KVTLFLQ 447
           H N   S    S  PLK T    K  +    +  +   + +      I+LT  K+ +  +
Sbjct: 251 HSNNNSSESLPSNTPLKETPRKSKFNFKSYVMYLQGLIHETGFSIGGIILTWEKLKIIEE 310

Query: 448 YMRFYRNIPITVNFWHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNTTVWHY 606
           Y    RN+P +V  +  +  +  H S+++  YP      +S+V R   +V  Y
Sbjct: 311 YYEIDRNLPPSVTRYRHSPLLVNHYSKLVNRYPKIN--SSSLVTRLPLSVTRY 361


>SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 273 HQFEAVIMFNVLYSAKDYDTFYKTTVY--MKDRVNQDLYIYVLSTLHIHR 416
           HQF   I+F+ ++    Y TF +        DR+  DL +Y +S   I R
Sbjct: 9   HQFPFNILFHKMFITHFYSTFIELAQLHDQHDRLELDLILYAISDALIIR 58


>SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)
          Length = 210

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 480 GEFLAYCPKDWSSRIT-HDRVLS 545
           G  L  CP+ W SRI+ H+ VLS
Sbjct: 48  GHVLQTCPRTWGSRISRHNHVLS 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,683,717
Number of Sequences: 59808
Number of extensions: 416095
Number of successful extensions: 926
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)