Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F09
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20270.1 68418.m02413 expressed protein contains Pfam domain,...    29   1.9  
At3g02620.1 68416.m00253 acyl-[acyl-carrier-protein] desaturase,...    29   3.3  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    28   5.7  
At2g32460.1 68415.m03965 myb family transcription factor (MYB101...    28   5.7  
At1g65640.1 68414.m07446 DegP protease, putative contains simila...    28   5.7  

>At5g20270.1 68418.m02413 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 332

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 450 YEVLPEYSNNGEF-LAYCPKDWSSRITHDRVLSFH 551
           Y  LPEY  + E+ L Y   DWS R     V SFH
Sbjct: 59  YCELPEYMKDNEYILNYYRADWSIRDAFFSVFSFH 93


>At3g02620.1 68416.m00253 acyl-[acyl-carrier-protein] desaturase,
           putative / stearoyl-ACP desaturase, putative similar to
           Acyl-[acyl-carrier protein] desaturase from Spinacia
           oleracea SP|P28645, Olea europaea SP|Q43593; contains
           Pfam profile PF03405 Fatty acid desaturase
          Length = 396

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = +3

Query: 111 PNHVSKSITISASWSIENNINHYKNETAVKIWILMKKQNWLLPLSVPF-SPLNPTHQFEA 287
           P H+  S T      + N + H    T  K+ I    +NW     + +  P+  + Q + 
Sbjct: 36  PRHLQVSKTFRPIKEVSNQVTH--TITQEKLEIFKSMENWAQENLLSYLKPVETSWQPQ- 92

Query: 288 VIMFNVLYSAKDYDTFYKTTVYMKDRVNQ--DLYIYVL 395
               + L   KD D FY+    ++DR  +  D Y  VL
Sbjct: 93  ----DFLPETKDEDRFYEQVKELRDRTKEIPDDYFVVL 126


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 324 YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHR 416
           Y   +KT V +  R N DLY+      HI++
Sbjct: 534 YGRIFKTVVILSSRKNSDLYVQEAKLDHIYK 564


>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
           identical to putative transcription factor MYB101
           GI:18087348 from [Arabidopsis thaliana]
          Length = 490

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 543 IVLDHA*SVNSNPLGSMPKIHRYWNIP 463
           +++DH  S N + LG+ P IH  +N P
Sbjct: 374 LLIDHLNSSNHSSLGANPNIHNKYNEP 400


>At1g65640.1 68414.m07446 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 518

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 417 SDLEGYAIPP--IYEVLPEYSNNGEFLAYCPKDWSSRITHDRVLSFHLQMG 563
           +D  GY IP   I   L     NG++  +C  D S ++  +  L  H +MG
Sbjct: 246 ADNIGYIIPTPVIKHFLTAVEENGQYGGFCTLDISYQLMENSQLRNHFKMG 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,601
Number of Sequences: 28952
Number of extensions: 293495
Number of successful extensions: 710
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)