Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F08
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   6.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 476 GQLRRVRDHDDVEVSPRLV 532
           G LR VR   D  +SPRL+
Sbjct: 228 GSLRGVRYTADGTISPRLI 246


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 385 SSPADMNPLPSL 350
           S P D+ PLPSL
Sbjct: 49  SLPLDLEPLPSL 60


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 98  DLFFRKLIRHCRLTWII 48
           DLFF+K+IR   +  II
Sbjct: 376 DLFFKKVIRDTPIVAII 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,106
Number of Sequences: 336
Number of extensions: 2136
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)