Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F08
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 231 6e-62
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 122 5e-29
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 115 6e-27
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 108 5e-25
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 87 2e-18
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 77 3e-15
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 43 3e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 42 7e-05
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 38 0.001
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 31 0.098
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 30 0.23
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 29 0.52
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.69
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 28 0.91
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 28 0.91
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 3.7
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 26 4.9
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 4.9
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 4.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.4
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 25 8.5
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 231 bits (565), Expect = 6e-62
Identities = 107/145 (73%), Positives = 129/145 (88%)
Frame = +3
Query: 81 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 260
LT+EQIAEF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEVDADGNGTI
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 261 DFPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVDE 440
DF EFLT+MARKMKDTD+EEE+REAF+VFDKDGNG+I+ EL HV+T+LGE+L+ EEV +
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 441 IIREADIDGERQVNYEEFVTMMTSK 515
+IREAD DG+ +NYEEF +++SK
Sbjct: 126 MIREADTDGDGVINYEEFSRVISSK 150
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 122 bits (293), Expect = 5e-29
Identities = 62/144 (43%), Positives = 92/144 (63%)
Frame = +3
Query: 84 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 263
++EQ E KEAF L+D D DG I T +G+V+RSLG N T+AEL + NE+ ID
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAID 59
Query: 264 FPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVDEI 443
+F++ ++ K+++T+SEEE +AFRVFDKD +G+I + M LGEKL+D EV +
Sbjct: 60 EKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLM 119
Query: 444 IREADIDGERQVNYEEFVTMMTSK 515
++EAD +Y +FV + +K
Sbjct: 120 VQEADPTNSGSFDYYDFVQRIMAK 143
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 115 bits (276), Expect = 6e-27
Identities = 54/143 (37%), Positives = 84/143 (58%)
Frame = +3
Query: 78 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 257
++TEEQ + EAF LFD D D I EL MR+LG N ++E+ ++ + D G G
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGY 89
Query: 258 IDFPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVD 437
+ +F+ +M K+ + D EEI+ AF +FD D G IS LR V L E + D+E++
Sbjct: 90 LQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELE 149
Query: 438 EIIREADIDGERQVNYEEFVTMM 506
+I E D+D + ++N +EF+ +M
Sbjct: 150 AMIEEFDLDQDGEINEQEFIAIM 172
Score = 50.8 bits (116), Expect = 1e-07
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +3
Query: 309 DSEEEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVDEIIREADIDGERQVNYE 488
+ ++I EAF++FD D + I ELR M LG EV +I+R+ D G+ + E
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQME 93
Query: 489 EFVTMMTSK 515
+FV +MT K
Sbjct: 94 DFVRVMTEK 102
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 108 bits (260), Expect = 5e-25
Identities = 56/136 (41%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Frame = +3
Query: 105 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTI 284
+K+AFSLFD+ G G I +G ++R+ GQNPT AE+ ++ + + A+ +D +FL +
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAE----VDMEQFLQV 63
Query: 285 MARKMK-DTDSE-EEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVDEIIREAD 458
+ R D + EE + F+VFDKD G I GELR+V+T+LGEKL++EE+DE+++
Sbjct: 64 LNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 123
Query: 459 IDGERQVNYEEFVTMM 506
+ + VNY +FV M+
Sbjct: 124 VK-DGMVNYHDFVQMI 138
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = +3
Query: 102 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 281
EF + F +FDKD G I EL V+ SLG+ + E+ +++ V +G +++ +F+
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQ 136
Query: 282 IM 287
++
Sbjct: 137 MI 138
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 86.6 bits (205), Expect = 2e-18
Identities = 50/140 (35%), Positives = 76/140 (54%)
Frame = +3
Query: 78 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 257
QLT QI E KEAF+L DKDGDG I +++ T++ SL Q+ +E D IN + N
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASE----DSINHMFESINPP 96
Query: 258 IDFPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVD 437
I+ FLT M + ++ EAF FD +G I +R ++++G+++ +EV+
Sbjct: 97 INLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVE 156
Query: 438 EIIREADIDGERQVNYEEFV 497
I+R G YE+FV
Sbjct: 157 SILRSYTSHG--VFYYEKFV 174
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 76.6 bits (180), Expect = 3e-15
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Frame = +3
Query: 84 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 263
+ E+I ++ F D + G+I E ++ S+ NP + L + VD DG G +D
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEFLSIP-SVASNPLASRL---FSVVDEDGGGDVD 74
Query: 264 FPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRHVM-----TNLGEKLTDE 428
F EF+ ++ + EE+++ AF+++D D +G+IS GEL V+ TNL E +
Sbjct: 75 FQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQ 134
Query: 429 EVDEIIREADIDGERQVNYEEF 494
VD+ I E D D + ++++EEF
Sbjct: 135 IVDKTIMEVDKDRDGKISFEEF 156
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +3
Query: 285 MARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVDEIIREADID 464
M+ K + +EE EAF +FD G+I +LR LGE LT E++ ++ A +
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGTN 60
Query: 465 GERQVNYEEFVTM 503
G +V+ EEF +
Sbjct: 61 G--KVSREEFAEL 71
Score = 34.7 bits (76), Expect = 0.011
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +3
Query: 90 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 269
E E +EAF LFD G I ++L LG+N T+ +LQ M++ A NG +
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDL--AGTNGKVSRE 66
Query: 270 EF 275
EF
Sbjct: 67 EF 68
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 41.9 bits (94), Expect = 7e-05
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Frame = +3
Query: 222 MINEVDADGNGTIDFPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRHV-- 395
+ N DAD NG IDF EF+ ++ + + +++ AF+++D D NG IS E+ +
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIVD 126
Query: 396 ----MTNLGEKLTDEE------VDEIIREADIDGERQVNYEEF 494
M KL ++E V++I D + + Q+ EEF
Sbjct: 127 AIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
Score = 28.3 bits (60), Expect = 0.91
Identities = 18/86 (20%), Positives = 37/86 (43%)
Frame = +3
Query: 249 NGTIDFPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDE 428
+G ++ EF I + D F VFD D NG+I E ++ ++
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND 99
Query: 429 EVDEIIREADIDGERQVNYEEFVTMM 506
++ + D+D ++Y+E + ++
Sbjct: 100 KLIWAFQLYDLDNNGLISYDEMLRIV 125
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +3
Query: 213 LQDMINEVDADGNGTIDFPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRH 392
L D N++D DG G +D P TI A + S +E+REA R + D +G + +
Sbjct: 21 LTDQFNKLDVDGKGYLDQP--TTIKAFEDSKKGSYDEVREAIREVNVDSSGRVEPEDFVG 78
Query: 393 VMTNLGEKLTDEEV 434
+ L + + EV
Sbjct: 79 IFNVLKKGVEGTEV 92
Score = 32.3 bits (70), Expect = 0.056
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 MARKMKDTDSEE--EIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVDEIIREAD 458
+ +K + +EE + + F D DG G++ + +K + +EV E IRE +
Sbjct: 6 LQKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVN 64
Query: 459 IDGERQVNYEEFV 497
+D +V E+FV
Sbjct: 65 VDSSGRVEPEDFV 77
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 31.5 bits (68), Expect = 0.098
Identities = 18/68 (26%), Positives = 37/68 (54%)
Frame = +3
Query: 303 DTDSEEEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVDEIIREADIDGERQVN 482
D + + E FR + + NG++S + V+ + KL+ +++++I ADID + +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 483 YEEFVTMM 506
++EF M
Sbjct: 59 FDEFAIAM 66
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.23
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 288 ARKMKDTDSEEEIREAFRVFDKDGNGFISAGELRHVMTNLGEKLTDEEVDEIIREADIDG 467
AR++K I + ++ D+ + +AGEL V LG+ +TD VDE +A+++
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEV---LGQNMTDINVDEEELDAELEA 169
Query: 468 ERQ 476
+Q
Sbjct: 170 LQQ 172
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 348 DKDGNGFISAGELRHVMTNLGEKLTDEEVDEIIRE 452
DKDG FI+ G ++ ++ GEK++ E+D ++ +
Sbjct: 393 DKDGYVFIT-GRIKELVNRGGEKISPAEIDAVLMQ 426
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.69
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +3
Query: 207 AELQDMINEVDADGNGTIDFPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGFISAGEL 386
A +++ V + N ID E + K+ + ++ E V +DG+ I+ E
Sbjct: 318 ARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRNDLNNEEPNSVVAEDGSEIITLDEN 377
Query: 387 RHVMTNLGEKLTDEEVDEIIR 449
EKL D +++E ++
Sbjct: 378 DQSPNEATEKLRDNDLEESLK 398
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 75 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEV 236
D+ E A + +S+FD+D +G IT +E+ +G + A L+D+ + +
Sbjct: 538 DETGEVDNATLEACYSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSI 593
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.3 bits (60), Expect = 0.91
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 225 INEVDADGNGTIDFPEFLTIMARKMKDTDSEEEIREAFRVFDK 353
I+E D + NG + F + + +KD+ EE+ ++F + D+
Sbjct: 545 ISESDDESNGDMIRDSFDRLSSESIKDSQKTEELHDSFGINDE 587
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 24 IVCDFSV-ADNPS*STMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP 200
+VC F++ AD + A++ T + F E+F + D + SL +
Sbjct: 842 LVCFFTIKADESAAQATANRETHGRQKLF-ESFGVLDSSNSVADSDSTNYDDENSLNRGG 900
Query: 201 TEAELQDMINEVDADGNGTIDFPEFLT 281
T + I +VD +G+I FP+ T
Sbjct: 901 TSESDSEFIWDVDESNSGSIVFPKSKT 927
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 396 MTNLGEKLTDEEVDEIIREADIDGERQ 476
MT ++L D+++DEII +DG +Q
Sbjct: 1 MTVQIDELDDKDLDEIIANGTLDGAKQ 27
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 147 TITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTIMARKMKDTDSEEE 323
T + GT+ S+G + E + ++++ T DFPE L+ +++ EE
Sbjct: 545 TTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCH---TYDFPESLSHCVKRLPTPIPAEE 601
Query: 324 IREAFRVFDK 353
+++ + + DK
Sbjct: 602 LQKRYNLRDK 611
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 372 SAGELRHVMTNLGEKLTDEEVDEIIREADIDGERQ 476
+ G+ R V KLT+E+ ++ R+ ++GER+
Sbjct: 786 AGGQDREVSEKESRKLTEEDRAQLQRDITVNGERR 820
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 111 EAFSLFDKDGDGTITTKELGTVMR 182
+ F FD+D DG + +EL + R
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFR 334
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 192 QNPTEAELQDMIN-EVDADGNGTIDFPEFLTIMARKMKDTDSEEEIREAFRVFDKDGNGF 368
Q + + D++N VDADG+ L I+ K+ ++ E RE F+ +
Sbjct: 3 QRVVDRDYYDILNISVDADGDTIKKSYRRLAILYHPDKNRENPEAAREKFQKL-AEAYQV 61
Query: 369 ISAGELRHVMTNLGE 413
+S +LR LG+
Sbjct: 62 LSDPKLREKYDKLGK 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,839
Number of Sequences: 5004
Number of extensions: 35361
Number of successful extensions: 136
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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