Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F07
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...    59   5e-10
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    31   0.14 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.33 
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar...    26   3.1  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    25   7.1  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   9.4  

>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 58.8 bits (136), Expect = 5e-10
 Identities = 22/74 (29%), Positives = 41/74 (55%)
 Frame = +1

Query: 226 RNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLKQAAGISRGA 405
           R +    FCK+FN RTA      P+P ++ V   R++   IH  P+S+ + +   + +G+
Sbjct: 31  RGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFTFTIHTPPTSWLISKTLDLEKGS 90

Query: 406 MEPVRETSGKITLK 447
             P+ +  G+++LK
Sbjct: 91  SSPLHDIKGQLSLK 104


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 327 ISIHFNPSGQWYTLLNISSPFIEIFTKSCYVNITLTKHWTQGWACSCHSGWYIGSQFRRM 148
           I + F+PS   Y+L     PF+   T S +V++ +    +    C C S  Y      R 
Sbjct: 208 IRLEFDPSSATYSLPPYQRPFLRGITHSIFVDLFIFLSPSSARHCLCWSLPYFQHYDLRF 267

Query: 147 I-NFFCYFF 124
           I +FF  F+
Sbjct: 268 IASFFTQFY 276


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 282 NISSPFIEIFTKSCYVNITLTKHWTQG---WACS 190
           +I+ P+I   T SC+ +I  T HW      W+CS
Sbjct: 300 DITRPYIPYRTVSCHDSIVSTMHWASTELLWSCS 333


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 244 AFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLK 378
           A+C + +   +  ++ VPL + +    D   QL   QAPS+  LK
Sbjct: 136 AYCNEKDRYGSQRRETVPLKSALHELRDEQVQLQCRQAPSNQALK 180


>SPAC1610.01 ||SPAC17A5.17|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 348 NHKLVGPISIHFNPSGQWYTLLNISS 271
           N  +  P+S+ F+P+ QW T  N+ +
Sbjct: 171 NASMGNPMSLFFDPNHQWVTAENVDT 196


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 330 PISIHFNPSGQWYTLLNISSP 268
           PIS+  NP+   Y  L +SSP
Sbjct: 137 PISLSINPASTSYEKLTVSSP 157


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 195 CSCHSGWYIGSQFRRMINFF 136
           C C + WY G+  R++ N F
Sbjct: 26  CLCCNPWYAGADTRQLANAF 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,874
Number of Sequences: 5004
Number of extensions: 36291
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)