Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F07
         (535 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005002-1|AAH05002.1|  192|Homo sapiens mitochondrial ribosomal...    90   4e-18
AK223112-1|BAD96832.1|  192|Homo sapiens mitochondrial ribosomal...    90   4e-18
AF151871-1|AAD34108.1|  192|Homo sapiens CGI-113 protein protein.      90   4e-18
AB049638-1|BAB40843.1|  192|Homo sapiens mitochondrial ribosomal...    90   4e-18
BC108277-1|AAI08278.1|  166|Homo sapiens mitochondrial ribosomal...    89   9e-18
AB051338-1|BAB54928.1|   61|Homo sapiens mitochondrial ribosomal...    38   0.022

>BC005002-1|AAH05002.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 192

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 39/75 (52%), Positives = 56/75 (74%)
 Frame = +1

Query: 223 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLKQAAGISRG 402
           QR ++I  FCK+FNERT +IK+G+PLPT++ V  DR++++ I Q   SYFLK AAGI +G
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 403 AMEPVRETSGKITLK 447
           A +  +E +G +TLK
Sbjct: 101 ARQTGKEVAGLVTLK 115


>AK223112-1|BAD96832.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 isoform a variant protein.
          Length = 192

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 39/75 (52%), Positives = 56/75 (74%)
 Frame = +1

Query: 223 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLKQAAGISRG 402
           QR ++I  FCK+FNERT +IK+G+PLPT++ V  DR++++ I Q   SYFLK AAGI +G
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 403 AMEPVRETSGKITLK 447
           A +  +E +G +TLK
Sbjct: 101 ARQTGKEVAGLVTLK 115


>AF151871-1|AAD34108.1|  192|Homo sapiens CGI-113 protein protein.
          Length = 192

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 39/75 (52%), Positives = 56/75 (74%)
 Frame = +1

Query: 223 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLKQAAGISRG 402
           QR ++I  FCK+FNERT +IK+G+PLPT++ V  DR++++ I Q   SYFLK AAGI +G
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 403 AMEPVRETSGKITLK 447
           A +  +E +G +TLK
Sbjct: 101 ARQTGKEVAGLVTLK 115


>AB049638-1|BAB40843.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 (L11mt) protein.
          Length = 192

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 39/75 (52%), Positives = 56/75 (74%)
 Frame = +1

Query: 223 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLKQAAGISRG 402
           QR ++I  FCK+FNERT +IK+G+PLPT++ V  DR++++ I Q   SYFLK AAGI +G
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 403 AMEPVRETSGKITLK 447
           A +  +E +G +TLK
Sbjct: 101 ARQTGKEVAGLVTLK 115


>BC108277-1|AAI08278.1|  166|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 166

 Score = 89.0 bits (211), Expect = 9e-18
 Identities = 38/75 (50%), Positives = 56/75 (74%)
 Frame = +1

Query: 223 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLKQAAGISRG 402
           +R ++I  FCK+FNERT +IK+G+PLPT++ V  DR++++ I Q   SYFLK AAGI +G
Sbjct: 15  ERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 74

Query: 403 AMEPVRETSGKITLK 447
           A +  +E +G +TLK
Sbjct: 75  ARQTGKEVAGLVTLK 89


>AB051338-1|BAB54928.1|   61|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 61

 Score = 37.9 bits (84), Expect = 0.022
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = +1

Query: 346 IHQAPSSYFLKQAAGISRGAMEPVRETSGKITLK 447
           I Q   SYFLK AAGI +GA +  +E +G +TLK
Sbjct: 2   IGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLK 35


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,402,259
Number of Sequences: 237096
Number of extensions: 1339282
Number of successful extensions: 2197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2197
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)