Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F07
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M77697-10|AAA27905.1|  195|Caenorhabditis elegans Hypothetical p...    96   1e-20
U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase ...    31   0.69 
AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator prot...    31   0.69 
AC084153-8|AAK84585.1|  380|Caenorhabditis elegans Hypothetical ...    28   4.8  

>M77697-10|AAA27905.1|  195|Caenorhabditis elegans Hypothetical
           protein B0303.15 protein.
          Length = 195

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 53/118 (44%), Positives = 68/118 (57%)
 Frame = +1

Query: 94  SKSVARLKSMKKVAEKVDHSSKLRTNIXXXXXXXXXXXXXXXXQRNINIAAFCKDFNERT 273
           SK  AR++  KK   KV H + LRTNI                QR +N+A FCK+FN+ T
Sbjct: 3   SKGAARVR--KKEIVKVVHGALLRTNIKAQMASAAPPLGPQLGQRGLNVANFCKEFNKET 60

Query: 274 ANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLKQAAGISRGAMEPVRETSGKITLK 447
            + KQGVPLPTR+ V  DR+Y L I    +++ LKQAAGI RG      E  GK+T+K
Sbjct: 61  GHFKQGVPLPTRITVKPDRTYDLEICTPTTTWLLKQAAGIGRGKASK-DEIVGKLTVK 117


>U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase
           transcriptionalregulation mediator protein.
          Length = 246

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 346 IHQAPSSYFLKQAAGISRGAMEPVRETSGKIT 441
           +HQAP  Y L Q+  +  GA+EP+R   G++T
Sbjct: 111 VHQAPDMYSLVQSRLL--GALEPLRNAFGEVT 140


>AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator protein
           6 protein.
          Length = 250

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 346 IHQAPSSYFLKQAAGISRGAMEPVRETSGKIT 441
           +HQAP  Y L Q+  +  GA+EP+R   G++T
Sbjct: 115 VHQAPDMYSLVQSRLL--GALEPLRNAFGEVT 144


>AC084153-8|AAK84585.1|  380|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.11 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 226 ADQALDPRVGLQLPFRLVYWFSISKNDQLFLLL 128
           AD ++  R  L +  RL +  SISKND+ F LL
Sbjct: 16  ADLSIPARAPLFIVHRLCFDRSISKNDECFYLL 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,878
Number of Sequences: 27780
Number of extensions: 200516
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)