Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F07
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32990.1 68414.m04063 ribosomal protein L11 family protein si...    64   6e-11
At4g35490.1 68417.m05043 ribosomal protein L11 family protein se...    57   8e-09
At5g51610.1 68418.m06398 ribosomal protein L11 family protein          35   0.039

>At1g32990.1 68414.m04063 ribosomal protein L11 family protein
           similar to chloroplast ribosomal protein L11 GI:21312
           from [Spinacia oleracea]
          Length = 222

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 28/73 (38%), Positives = 47/73 (64%)
 Frame = +1

Query: 226 RNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLKQAAGISRGA 405
           + +NI AFCKD+N RTA+ K G  +P  + V  D+S+  ++   P+S  L +AAG+ +G+
Sbjct: 100 KGVNIMAFCKDYNARTAD-KAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGS 158

Query: 406 MEPVRETSGKITL 444
            +P ++  G IT+
Sbjct: 159 KDPQQDKVGVITI 171


>At4g35490.1 68417.m05043 ribosomal protein L11 family protein
           several ribosomal proteins L11
          Length = 155

 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 22/64 (34%), Positives = 36/64 (56%)
 Frame = +1

Query: 223 QRNINIAAFCKDFNERTANIKQGVPLPTRVKVNADRSYQLVIHQAPSSYFLKQAAGISRG 402
           Q  +N+ AFCKDFN RT   K   P+   +    D S++  +     S+++K+AAG+ +G
Sbjct: 38  QYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKG 97

Query: 403 AMEP 414
           +  P
Sbjct: 98  STRP 101


>At5g51610.1 68418.m06398 ribosomal protein L11 family protein 
          Length = 182

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 325 DRSYQLVIHQAPSSYFLKQAAGISRGAMEPVRETSGKITL 444
           D+S+  ++   P+S+ L +AAG+ +G+ +P +   G IT+
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITI 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,653
Number of Sequences: 28952
Number of extensions: 183738
Number of successful extensions: 362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)