Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F06
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110...    30   1.8  
12_02_1173 + 26692030-26692379,26692478-26692565,26693309-266934...    29   4.2  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    28   5.5  
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200...    27   9.7  

>09_04_0606 +
           18909065-18909218,18909674-18909737,18910895-18911023,
           18913680-18913830,18914369-18914491,18915638-18915711,
           18916048-18916591,18916948-18917085,18917159-18917203
          Length = 473

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 316 PVMQLYNSVIVSDYKAAVKTTFQLEKECRSDVISSVV 426
           P + L N +I+SD  A +    + E   + DVI+SV+
Sbjct: 252 PALDLINILIISDASALISFKMKYESFTKGDVINSVI 288


>12_02_1173 +
           26692030-26692379,26692478-26692565,26693309-26693436,
           26693514-26693705,26693810-26694012,26694127-26694290,
           26694419-26694499,26694592-26694758,26694839-26694944,
           26695097-26695347,26695388-26695508,26695594-26695722,
           26695813-26696181
          Length = 782

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/95 (21%), Positives = 40/95 (42%)
 Frame = +1

Query: 112 LFEGTIKIINRLVIISEIPSRRRIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITSND 291
           L    + ++N   + SEI S       K++ +  +  AL  +        NTA   +   
Sbjct: 331 LMHTAVDLVNETKLDSEIKSWLAFAAQKVVEVNALAKALAGQKDEAYFAANTAAQASRRS 390

Query: 292 SPPFNNADPVMQLYNSVIVSDYKAAVKTTFQLEKE 396
           SP   N + V +   ++  SD++ A   + +L+ +
Sbjct: 391 SPRVTN-EEVQKAAAALRGSDHRRATNVSARLDAQ 424


>01_06_0946 +
           33220910-33222221,33223373-33223734,33223863-33224073,
           33224174-33224411,33224492-33224642,33224733-33224997,
           33231775-33231820,33232167-33232815,33232883-33233384,
           33235023-33235360,33235466-33235676,33235769-33235992,
           33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 184 DDDKMILITVVLSALVTRVSLTPLCNNTAVSITSNDS 294
           +  + + + VV   LV ++S   +C N A SIT N +
Sbjct: 838 ESSETLTVNVVAQVLVAQLSQEQICINQAASITGNQT 874


>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
            22220149-22220365,22220798-22221021,22221559-22221738,
            22221875-22222013,22222107-22222255,22223394-22223505,
            22223998-22224506,22224661-22224784,22224904-22225178,
            22225507-22225626,22225707-22225769,22225861-22226052,
            22226381-22226440,22226535-22226738,22226926-22227051,
            22227093-22227254,22227357-22227476,22227665-22227820,
            22227895-22227957,22228041-22228168,22228524-22228920,
            22229442-22229544,22229646-22229776,22230096-22230167,
            22230472-22230553,22231083-22231190,22231288-22231429,
            22231659-22231698,22231746-22231876,22232215-22232301,
            22232395-22232605,22232687-22232741,22232836-22232927,
            22233011-22233071,22233361-22233719
          Length = 2010

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 235  RVSLTPLCNNTAVSITSN-DSPPFNNADPVMQLYNSVIVSDYKAAVKTTFQLEKECRSDV 411
            +++LTP CN++ ++I  N D   F NA  ++   + V  +      + ++Q+E   R   
Sbjct: 1822 KLNLTPSCNHSIITIGGNTDVELFWNAKDLLSA-SRVDTNGRGVPSQISYQVEALKRQSF 1880

Query: 412  ISSVVNKLLLEGQPNVVEYAY 474
               +   L   GQ   +E  Y
Sbjct: 1881 YDKITIILPATGQTEEIEVIY 1901


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,859
Number of Sequences: 37544
Number of extensions: 235619
Number of successful extensions: 544
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)