Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F06
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_32959| Best HMM Match : Phage_GP20 (HMM E-Value=2)                  29   3.2  
SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1)                  29   3.2  
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    29   4.3  
SB_9756| Best HMM Match : Cadherin (HMM E-Value=0)                     29   4.3  
SB_32215| Best HMM Match : FtsX (HMM E-Value=0.29)                     28   5.7  
SB_3093| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              28   7.5  
SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)         28   7.5  
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_11057| Best HMM Match : Cornichon (HMM E-Value=4.5e-07)             27   9.9  
SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)               27   9.9  

>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 232 TRVSLTPLCNNTAVSITSNDSPPFNNAD 315
           T+ S TP+C + A   T+N SP  N++D
Sbjct: 570 TQSSATPMCQSGATDTTNNQSPAVNSSD 597


>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 389 KRNAEVTSSAPS*INYSSKDNQTSSNTLTVSGTDP 493
           + N +VT   P  ++YSS D+    N     GT+P
Sbjct: 820 RHNDDVTDKKPRLVDYSSADSSDHDNAADNKGTEP 854


>SB_32959| Best HMM Match : Phage_GP20 (HMM E-Value=2)
          Length = 311

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 624 VASVIGLQFKLESKFITFIGNNHWIFV 544
           V S+    FK E K + F+G N W+ +
Sbjct: 267 VGSIANFVFKAEGKALKFLGENSWLLI 293


>SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1)
          Length = 317

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 184 DDDKMILITVVLSA-LVTRVSLTPLCNNTAVSITSNDSP 297
           DDD   L  ++  A L    S TPLC + + +I   DSP
Sbjct: 61  DDDPASLANIINEAFLAPMASFTPLCADASPTIPPTDSP 99


>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 447

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 184 DDDKMILITVVLSALVTRV-SLTPLCNNTAVSITSNDSP 297
           DDD   L  ++  A ++ + S TPLC + + +I   DSP
Sbjct: 111 DDDPASLANIINEAFLSPMASFTPLCADASPTIPPTDSP 149


>SB_9756| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 608

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +1

Query: 226 LVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQL-YNSVIVSDYKAAVKTTFQLEKECR 402
           + T    +P   +  V IT ND    N+  PV +  Y  V+VS+Y    +T  +L     
Sbjct: 356 IATDNGTSPRSAHARVHITVND---VNDNRPVFEPPYYQVMVSEYAPVGQTILRLTVSDN 412

Query: 403 SDVISSVVNKLLLEGQPN 456
               +S +N  ++ G PN
Sbjct: 413 DTAENSQLNLRVVSGDPN 430


>SB_32215| Best HMM Match : FtsX (HMM E-Value=0.29)
          Length = 237

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 124 TIKIINRLVIISEIPSRRRIDDDKMILITVVLSALVTRVSLTPLCNNTAVSIT 282
           TI II   +IIS I +   I     I+IT++++ ++T + +T +   T +  T
Sbjct: 127 TIPIIAITIIISIITTIIIIITTTTIIITIIITIIITTIIITTIIITTIIITT 179


>SB_3093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 624 VASVIGLQFKLESKFITFIGNNHWIFVKQQSK-LYRKVNFDYVLTGSVPETVSVFDDV 454
           V S+  L FK   + + F+G N W+ +   +  L R++   +   G++P      D V
Sbjct: 276 VGSIANLVFKAAGEAVKFLGENAWLLILAVAAFLVRRMQSSHRNKGALPPGRHAVDPV 333


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +1

Query: 163 IPSRRRIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITS 285
           +P  RR    +M+++  +   +++R++L+P C+N   S+ S
Sbjct: 375 LPPLRRDYTHQMVVVAPLKVKMISRLTLSPTCSNKPHSLPS 415


>SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)
          Length = 609

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 385 LEKECRSDVISSVVNKLLLE-GQPNVVEYAYSLWYRSGEDIVKVYFPIE 528
           L    RSD+    +  L++E  +PN   +  + WYR  +  VK++   E
Sbjct: 245 LSHTLRSDLADPYLEMLIIEIKKPNTKPFLIATWYRPPKSSVKLFESFE 293


>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = +1

Query: 184 DDDKMILITVVLSALVTRVSL-TPLCNNTAVSITSNDSPPFNNADPVMQL--YNSVIVSD 354
           DDD   L  ++  A +  ++  TPLC + + +I   DSP       + +L   N+   + 
Sbjct: 290 DDDPASLANIINEAFLAPMAFFTPLCADASPTIPPTDSPSVTELGVLKKLSSLNTTKATR 349

Query: 355 YKAAVKTTFQLEKECRSDVISSVVNKLLLEGQ 450
                    +   +  +  ++S++N    EG+
Sbjct: 350 PDGVPGWLLKENADLLAPAVTSIINTSFAEGR 381


>SB_11057| Best HMM Match : Cornichon (HMM E-Value=4.5e-07)
          Length = 340

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 624 VASVIGLQFKLESKFITFIGNNHWIFV 544
           V S+    FK   + +TF+G N W+ +
Sbjct: 220 VGSIANFVFKAAGEAVTFLGENAWLLI 246


>SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
          Length = 165

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 391 KECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVYFPIEFRLLFNEDP 555
           K C   +  SV N     G P++ +Y  + WYR+ E ++       F  +F  +P
Sbjct: 96  KICDFGLARSVSNITQEAGDPSLTDYVATRWYRAPEILLASPRKATFSWIFYIEP 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,385,439
Number of Sequences: 59808
Number of extensions: 296003
Number of successful extensions: 824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)