Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F06
(644 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54670.1 68418.m06807 kinesin-like protein C (KATC) 30 1.1
At5g28930.1 68418.m03578 hypothetical protein various predicted ... 29 2.0
At4g04700.1 68417.m00690 calcium-dependent protein kinase, putat... 29 3.5
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 29 3.5
At2g40910.2 68415.m05048 F-box protein-related similar to F-box... 29 3.5
At2g40910.1 68415.m05049 F-box protein-related similar to F-box... 29 3.5
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 28 4.6
At1g78355.1 68414.m09131 hypothetical protein 28 6.1
At3g26230.1 68416.m03272 cytochrome P450 family protein contains... 27 8.1
>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
Length = 754
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +1
Query: 322 MQLYNSVIVSDYKAAVKTTFQLEKECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGED 501
+QLYNS + D A +T + EKE R+ +I ++ N L+GQ + ++ + S ED
Sbjct: 208 LQLYNSKLQGDLDEAHETIKRGEKE-RTAIIENIGN---LKGQFSALQEQLAASKASQED 263
Query: 502 IVK 510
I+K
Sbjct: 264 IMK 266
>At5g28930.1 68418.m03578 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 509
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 313 DPVMQLYNSVIVSDYKAAVKTTFQLEKECRSDV 411
D V+ YNSV V D ++ T F EKE + DV
Sbjct: 286 DDVVSFYNSVDVPDGQSCGGTNFNNEKEFQGDV 318
>At4g04700.1 68417.m00690 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
contains protein kinase domain, Pfam:PF00069
Length = 485
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 358 KAAVKTTFQLEKECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVY 516
K +KT + ++EC DV + L G+PN+VE+ + + IV Y
Sbjct: 57 KTILKTKLK-DEECEEDVKREIRIMKQLSGEPNIVEFKNAYEDKDSVHIVMEY 108
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +1
Query: 115 FEGTIKIINRLVIISEIPSRRRIDDDKMILI------TVVLSALVTRVSLTPLCNNTAVS 276
F+G I+ ++S + + + I D++I + TVV + LVT+ + C N VS
Sbjct: 609 FQGNWSILGPRTVLSWLIATKVISRDEVIQLRDPDDDTVVKTGLVTKDGVVCTCCNKTVS 668
Query: 277 ITS-NDSPPFNNADPVMQLY 333
++ + FN P + L+
Sbjct: 669 LSEFKNHAGFNQNCPCLNLF 688
>At2g40910.2 68415.m05048 F-box protein-related similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; similar to F-box protein family, AtFBX8
(GI:20197464) [Arabidopsis thaliana]
Length = 442
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 594 LESKFITFIGNNHWIFVKQQSKLYRKVNFDYVLTGSVPETVSVF 463
+ S F T + + HW+FV + +RKV P TV F
Sbjct: 222 ISSAFFTNLKSEHWVFVLEAGGSWRKVRTLESYHPHAPSTVGQF 265
>At2g40910.1 68415.m05049 F-box protein-related similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; similar to F-box protein family, AtFBX8
(GI:20197464) [Arabidopsis thaliana]
Length = 449
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 594 LESKFITFIGNNHWIFVKQQSKLYRKVNFDYVLTGSVPETVSVF 463
+ S F T + + HW+FV + +RKV P TV F
Sbjct: 229 ISSAFFTNLKSEHWVFVLEAGGSWRKVRTLESYHPHAPSTVGQF 272
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 543 KQQSKLYRKVNFDYVLTGSVPETVSVFDD 457
KQ K+YRK+ V G+VPE +V D
Sbjct: 655 KQIEKIYRKIALKLVREGAVPEEPAVASD 683
>At1g78355.1 68414.m09131 hypothetical protein
Length = 149
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 539 CLTKIQWLLPINVMNLLSSL 598
CL I+W L +NVM+LL SL
Sbjct: 119 CLCVIEWELSLNVMSLLFSL 138
>At3g26230.1 68416.m03272 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 498
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +1
Query: 340 VIVSDYKAAVKTTFQLEKECRSDVISSVVNKLLLEGQP-NVVEYAYSLWYRSGEDIVKVY 516
V++S +AA + + EC + I++V +KL +GQ + Y SL +K +
Sbjct: 71 VVISSTEAAEEALKVHDLECCTRPITNVTSKLWRDGQDIGLAPYGESLRELRKLSFLKFF 130
Query: 517 FPIE---FRLLFNEDPVVITNKRDELALK 594
+ FR + E+ ++ K E ALK
Sbjct: 131 STTKVRSFRYIREEENDLMVKKLKEAALK 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,394,191
Number of Sequences: 28952
Number of extensions: 207684
Number of successful extensions: 508
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -