Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F05
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 136   1e-32
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            95   2e-20
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            62   4e-10
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   6e-10
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.026
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_40390| Best HMM Match : BON (HMM E-Value=0.68)                      31   0.75 
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)               30   1.00 
SB_22569| Best HMM Match : NAF (HMM E-Value=6.2)                       29   2.3  
SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)             28   4.0  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            28   5.3  
SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.3  
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_21938| Best HMM Match : Big_2 (HMM E-Value=0.69)                    27   7.0  
SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)                27   7.0  
SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)            27   9.3  
SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  136 bits (329), Expect = 1e-32
 Identities = 67/163 (41%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
 Frame = +1

Query: 4   SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSV 183
           S  Y  ++T FSP G L Q+EYA  AV  G T+VG++ +N VV+  E K  + L +  +V
Sbjct: 2   SGSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTV 61

Query: 184 NKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYT 363
            K+  +  H+ M ++G+  D R+LV +AR   Q + L   +P+    + + +AT+ Q YT
Sbjct: 62  RKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYT 121

Query: 364 QSGGVRPFGVSLLICGWEND-RPYLFQCDPSGAYFAWKATAMG 489
           QS G RPFG+S LI G++ D  P L+Q DPSG Y AWK    G
Sbjct: 122 QSNGRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSG 164


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 49/132 (37%), Positives = 72/132 (54%)
 Frame = +1

Query: 10  RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 189
           RY  S + FSP G++ Q+EYA  AV   GT++ I+  +GVV   E    S LY+  +  +
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195

Query: 190 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQS 369
           +  I  HIGM  +G+  D R +V  AR+ A  Y  +Y  PIP   LV RV+  +  +T  
Sbjct: 196 IFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLY 255

Query: 370 GGVRPFGVSLLI 405
             +RPFG  + +
Sbjct: 256 SAMRPFGCRIYV 267


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
 Frame = +1

Query: 25  LTTFSPSGKLVQIEYALAAVAAGG-TSVGIKASNGVVIATENKHKSILYDEHSVNKVEMI 201
           +T FSP G+L       +    GG TSVGI+ ++  V+ T+              KV + 
Sbjct: 13  ITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQK-------------KVPLP 59

Query: 202 TGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGVR 381
                        D R  V +AR  A  +   +   IP   L +R+A + Q YTQ+  +R
Sbjct: 60  IPQA---------DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMR 110

Query: 382 PFGVSLLICGWENDR-PYLFQCDPSGAYFAWKATAMGKNFNNGKTFL 519
           P G  +++ G + ++ P L++ DP+G +  +KA ++G       +FL
Sbjct: 111 PLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFL 157


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +1

Query: 373 GVRPFGVSLLICGWENDRPYLFQCDPSGAY 462
           GVRPFGVSLL+ GW++DRPYLFQCDPS ++
Sbjct: 2   GVRPFGVSLLVAGWDDDRPYLFQCDPSESF 31


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 241 DYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFG 390
           D R  V +AR  A  +   +   IP   L +RVA + Q YTQ+  +RP G
Sbjct: 27  DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76


>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 427 PYLFQCDPSGAYFAWKATAMGKNFNNGKTFL 519
           P++FQ  PS  YF  KA A+G    + +T+L
Sbjct: 4   PHIFQTCPSANYFDCKAMAIGARSQSARTYL 34


>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
          Length = 561

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 333 ASGDRHARIYSIRRRPSFRRFVTDLRLGERSPLLIPVRSVGRVLRLEG 476
           A G   + + S +RR SF  + TD   G+ SPL     S  R+LRL G
Sbjct: 194 AIGHESSSVMSSKRRRSFLDYDTDPTSGQTSPL--SPSSASRILRLPG 239


>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
          Length = 550

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 224 TPAWALIIVCSSHKPGKWPNSTT 292
           TP   +I+   + +PGKWPN+TT
Sbjct: 260 TPQGQIILTQETLEPGKWPNNTT 282


>SB_22569| Best HMM Match : NAF (HMM E-Value=6.2)
          Length = 307

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 249 SARHTSQENGPTVLPDVPRADTHSAV 326
           +++HT+QENG   LPD+   +T+ AV
Sbjct: 108 NSKHTAQENGLLNLPDITLRNTNLAV 133


>SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)
          Length = 380

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 34  FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 192
           +  +GKLV  E+ +   A   TSV     +   ++T       LY +H VNKV
Sbjct: 210 YGTTGKLVNDEFRVMR-ALNATSVATSLLSNTNVSTPLNGTFFLYRDHLVNKV 261


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +3

Query: 195  NDYWPYRNGVLRHGP*LSSARHTSQENGPTVLPDVPRADTHSAVGPASGDRHARIYSIRR 374
            ND++    G L  G    SA  +  E     L  V R    +  G  +GD+  ++YS+ +
Sbjct: 2070 NDFYSASAGRLYDGSSWCSATSSQAEYLQVDLGRVTRVTGIATQGSPTGDKWVKLYSVEQ 2129

Query: 375  RPSFRRFVTDLRLGERS 425
                  F T+   GE S
Sbjct: 2130 SDD-GHFFTEYTAGESS 2145


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 163 LYDEHSVNKVEMITGHIGM-VYSGMGP 240
           L +EHS NKV+M+ G+ G  +Y   GP
Sbjct: 367 LLEEHSNNKVKMVGGNTGKGIYKKDGP 393


>SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 417

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 54  SSNRICFSGCSSRRHFRWHKSVQWCCD 134
           +SN    SG  S R  R H S  WC D
Sbjct: 41  NSNITASSGSGSAREARLHNSAAWCSD 67


>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 246 SSARHTSQENGPTVLPDVPRADTHSAVGPASG 341
           SS+  +S  +GPT +P  P +      GP SG
Sbjct: 68  SSSTSSSTTHGPTPVPATPSSPPRPTPGPGSG 99


>SB_21938| Best HMM Match : Big_2 (HMM E-Value=0.69)
          Length = 651

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 391 VSLLICGWENDRPYLFQCDPSGAYFAWKA 477
           VSL   GW ++ P+ F     G  F WK+
Sbjct: 95  VSLFATGWMDESPFAFANAVPGLVFNWKS 123


>SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)
          Length = 266

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +3

Query: 258 HTSQENGPTVLPDVPRADTHSAVGPASGDRHARIYSIRRRPSFR 389
           +T  + GP VLP V R D  SAV   S     R +SIR   +FR
Sbjct: 201 NTKCQRGPDVLPFVGRKD--SAVSTLSVYDALRTFSIRTLVAFR 242


>SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)
          Length = 388

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -1

Query: 181 HCVHHIRCSCV-YSLLQSQHHW 119
           H VHH+ C+C  YS     H W
Sbjct: 309 HMVHHVWCTCTEYSEHMVHHEW 330


>SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +1

Query: 58  QIEYALAAVAAGGTSVGIKASNGVVIATENKHK-SILYDEHSVNKVEMITGHIGMVYSGM 234
           Q+E ALAA+      +G + +N V  A    HK +++  +   N+VE     I  V   +
Sbjct: 298 QVEQALAAIHKVNLVIGDQINNQVEQALAAIHKVNLVIGDQINNQVEQALAAIHKVNLVI 357

Query: 235 GPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATV 348
           G   +  V Q      +  L+  + I   QL Q +A +
Sbjct: 358 GDQIKNQVEQGLAAIHKVNLVIGDQIKN-QLEQALAAI 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,056,692
Number of Sequences: 59808
Number of extensions: 385367
Number of successful extensions: 958
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)