Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F04
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 0.79
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 27 1.4
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 27 2.4
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.2
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 26 4.2
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.2
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 5.6
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 5.6
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 5.6
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 5.6
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 7.3
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce... 25 7.3
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 25 9.7
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|... 25 9.7
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 28.3 bits (60), Expect = 0.79
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 104 SLYNFTDELVTRVNRKTESHFVTSGL 181
S NF DELV RV R + H V S L
Sbjct: 472 SYENFPDELVPRVERISSGHLVNSEL 497
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 300 ILKYFLLKHECGWSLNTTLISFRVSSVAPNDSAD 199
+ +Y+L + SLN TL ++R+ +PN ++D
Sbjct: 712 VARYYLWRRHFAESLNATLKAYRILISSPNVTSD 745
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 353 IFTDLKMSVYEQFKQDVQMTGVSKVNELPWDNNTAT-ATAINDF 481
++ DL S++EQ +Q ++K N+L ++ T A+N F
Sbjct: 693 VYNDLAESLHEQLNAYIQRKKINKKNQLNGNDETQNLVLALNKF 736
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 281 NRKYFNILKEIGENDGGVLKLSG 349
NRK F EIGEN+ L+L+G
Sbjct: 228 NRKKFEKYGEIGENEPVALRLTG 250
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 281 NRKYFNILKEIGENDGGVLKLSG 349
NRK F EIGEN+ L+L+G
Sbjct: 228 NRKKFEKYGEIGENEPVALRLTG 250
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 281 NRKYFNILKEIGENDGGVLKLSG 349
NRK F EIGEN+ L+L+G
Sbjct: 228 NRKKFEKYGEIGENEPVALRLTG 250
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 246 LISFRVSSVAPNDSADIIVHADSPDVTKWLSV--FRLTRVTSSSVKLYN 106
++SF V S S+ +IVH + D++ LSV RL + SV+ N
Sbjct: 332 ILSFPVDSFLAERSSWLIVHREVGDLSNALSVSMVRLVDILKFSVESVN 380
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 177 PDVTKWLSVFRLTRVTSSSVKL 112
PD+ WL+V LT +T+ S L
Sbjct: 669 PDIDNWLNVLPLTAITTFSSML 690
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +2
Query: 398 DVQMTGVSKVNELPWDNNTATATAINDFVRLATHEAIDEIVTTSD 532
DV +TG WD T DFV TH+ + SD
Sbjct: 447 DVLITGADDKTVRQWDIVTGRCIQTLDFVWAETHDTSTSQILVSD 491
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 5.6
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -3
Query: 481 EIIYSSRGSRVIVPR*FINFRHSCHLHVLFELFVDTHFQISKYRTGKF*DTAIVFTNFF 305
EI+Y RGS VI P R+ + V+ + T F+ Y T + D +I F F
Sbjct: 145 EILYLLRGSSVIAPL-ITALRNEDQVLVVLPYYEHTDFR-QYYSTFSYRDMSIYFRCLF 201
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 7.3
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 261 SLNTTLISFRVSSVAPNDSADIIVHADSPDVTKWLSVFR--LTRVTSSSVKLYNDL 100
SL+ L S R S PN S D+IV L L ++ SS KL N +
Sbjct: 660 SLDEALQSARSSCAVPNSSLDLIVSELKDSKNSLLDALEHSLQDISMSSQKLGNGI 715
>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 214
Score = 25.0 bits (52), Expect = 7.3
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +2
Query: 53 NSYGNCDDFWAHTFLKRSLYNFTDELVTRVNRKTESHFVTSGLSAWTIISALSLGATDET 232
N Y + W + + L F +E+V+RV + E+ T L+ T + +T
Sbjct: 18 NDYEDLCTQWVNERMAPDLLPFAEEIVSRVLDRIEAQRETLQLAIGTSSATSYRSVLMQT 77
Query: 233 -LNEINVVLRLHPHSCFNR 286
L + VLR + + N+
Sbjct: 78 ELERVKFVLRSYMRTRINK 96
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 137 RVNRKTESHFVTSGLSAWTIISALSLGATDETLNE 241
R R+ + F +++WTII + DE+L++
Sbjct: 228 RDRRQYQETFKNQSIASWTIIDQEETSSDDESLSK 262
>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 106
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 216 PNDSADIIVHADSPDVTKW 160
P D+ II+ ++ PDV +W
Sbjct: 15 PEDTTFIIIASNGPDVMRW 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,007
Number of Sequences: 5004
Number of extensions: 42056
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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