Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F03
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 29 0.37
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 28 0.86
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 27 2.0
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 26 3.5
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 3.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.6
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 6.1
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 6.1
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.0
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 8.0
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 29.1 bits (62), Expect = 0.37
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 311 YYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLN 448
Y ++++VP P +PE K + + E + V + E+DG++L+
Sbjct: 1139 YLFEIIDVVPQPG-RPETRHKLKLVTREEIKGTVAVVCEVDGYLLS 1183
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 27.9 bits (59), Expect = 0.86
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 101 LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTI 214
L A + ++ +P + L KK+F+N +NVV+++++
Sbjct: 1284 LTYAFNEEKTIRASLPTLICLSKKIFENAENVVENHSL 1321
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 302 NPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQE 406
N YY L PW K + T+ TRA + E+ +E
Sbjct: 462 NGHYYALLKTEKDGPWYKYDDTRVTRATLREVLEE 496
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 391 FHDSSCFLSHFWFCPRR-WNYLYKWHVVWWINWMRH 287
F SS L++ P R WN+L H+V + + RH
Sbjct: 252 FAGSSATLTYLDIVPARTWNHLCHGHLVMCMGYRRH 287
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 138 NASRKIWNSKRKYSKIWTMS-SMTTLSY 218
NA RK+WN +R+Y S S T +SY
Sbjct: 36 NAIRKLWNERRRYRMPKDESISPTPISY 63
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 111 PLRMRFSYKNASRKIWNSKRKYSKIW 188
PL++ F YKN +R+ W S + +W
Sbjct: 394 PLQVAFVYKNLARR-WISLEEIENLW 418
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 415 GDRLLAYFFHDSSCF-LSHFWFCPRRW 338
G RLL Y+F+D CF L++ RW
Sbjct: 204 GGRLLDYYFNDLVCFDLNNLNTSDSRW 230
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 257 ENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREI 430
E + K+ P PP V E+ + KPE+ + +++E +G+ L RE+
Sbjct: 209 EKAEEKSDAESMAPSTPPKTVN--ELPEQIYEKPEIVLQPNSLIEPLGKIIQVLKREV 264
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 6.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 349 PRRWNYLYKWHVV 311
PR W++ YKW +V
Sbjct: 97 PRNWSHSYKWWIV 109
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 8.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 180 WNTFFLSSKFSGTHS 136
WN FFL +KF HS
Sbjct: 364 WNIFFLCTKFWSLHS 378
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 24.6 bits (51), Expect = 8.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 396 ISSMIALVFLVTSGFVH 346
+SSMI + FL+T GF++
Sbjct: 441 LSSMITMTFLLTFGFIN 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,717
Number of Sequences: 5004
Number of extensions: 38093
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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