Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F03
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 70 1e-12
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 56 2e-08
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 50 1e-06
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 46 1e-05
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 46 2e-05
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 31 0.65
11_01_0605 + 4821363-4823246 30 1.1
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 2.0
11_01_0606 + 4831102-4833033 29 2.6
03_01_0110 - 865605-866004,866094-866712,867659-867863 29 2.6
06_01_1076 - 8778210-8778734 28 4.6
07_03_0344 - 16976854-16977186,16978920-16979000 27 6.0
07_03_0522 - 19021915-19022649,19022725-19023012,19023091-190235... 27 8.0
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 69.7 bits (163), Expect = 1e-12
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
Frame = +2
Query: 68 EQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXX 247
EQ +CV +L +DA V E + E+ ++KKK+F LD + + I
Sbjct: 76 EQIKCVSSVQEL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSISIT 131
Query: 248 XXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSRE 427
QVI H NPP + L+EI+ T EV K ++ E +G + V S++
Sbjct: 132 RLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSERLG-KTVICSQD 190
Query: 428 IDGFVLNRIQYAILGEV-WRL 487
GF++NRI ++ E W L
Sbjct: 191 YPGFIVNRILMPMINEAFWAL 211
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 55.6 bits (128), Expect = 2e-08
Identities = 29/113 (25%), Positives = 56/113 (49%)
Frame = +2
Query: 116 KDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXENMKHKAQVIVSH 295
KD V E V EN++LK+++F +L+ + + E + K +++ +H
Sbjct: 392 KDVDLVIEAVIENVKLKQQIFSDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRIVGAH 451
Query: 296 PVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNRI 454
+P + +PL+EIV T P+V + ++I + P+ + GF +NR+
Sbjct: 452 FFSPAHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKKTPIVVG-NCTGFAVNRM 503
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 50.0 bits (114), Expect = 1e-06
Identities = 33/123 (26%), Positives = 55/123 (44%)
Frame = +2
Query: 83 VKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXEN 262
+KG D + KD V E V E + LK+ +F +L+ V + I E
Sbjct: 377 LKGALDYS-DFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATNTSTIDLNVVGEK 435
Query: 263 MKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFV 442
+ ++I +H +P + +PL+EIV T P+ + + I + PV + GF
Sbjct: 436 TNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKVPVVVG-NCTGFA 494
Query: 443 LNR 451
+NR
Sbjct: 495 VNR 497
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/113 (23%), Positives = 53/113 (46%)
Frame = +2
Query: 116 KDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXENMKHKAQVIVSH 295
++A V E V E+L LK+K+F +L+ N I + + ++ +H
Sbjct: 389 READVVIEAVIEDLSLKQKIFADLEKYCHSNCILATNTSTIDLHLIGQKTSCQDRIAGAH 448
Query: 296 PVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNRI 454
+P + +PL+EI+ T +V + ++I + P+ + GF +NR+
Sbjct: 449 FFSPAHAMPLLEIIRTHRTSSQVVIDLLNVAKQIRKTPIVVG-NCTGFAVNRM 500
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/120 (24%), Positives = 58/120 (48%)
Frame = +2
Query: 95 CDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXENMKHK 274
C LAI + ++ V EN+++K++VF +L+ + + E +
Sbjct: 402 CYLAIYFIEQYWM--AVVENVKVKQQVFADLERYCPSHCVLATNTSTIDLDLIGEKTNSQ 459
Query: 275 AQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNRI 454
++ +H +P + +PL+EIV + T P+V + ++I + PV + GF +NR+
Sbjct: 460 DRIAGAHFFSPAHVMPLLEIVRSNHTSPQVVVDLLDVGKKIKKTPVVVG-NCTGFAVNRM 518
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 30.7 bits (66), Expect = 0.65
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 332 IVPAPWTKPEVTKKTRAIMEEIGQEPVT 415
IVPAPW++P K +AI+++ G+ T
Sbjct: 282 IVPAPWSRPLSEKVIKAILKDNGETKTT 309
>11_01_0605 + 4821363-4823246
Length = 627
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 210 VLSSTTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAKSQVP 88
+LSS +K WNT ++SG H C+ +AS + + +P
Sbjct: 51 ILSSVGSTKNWNTCSNPCQWSGVH-CSSVASSAFVTRLSLP 90
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 332 IVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLN 448
++PAPW K T K + + ++GQ + + I+G +N
Sbjct: 504 VLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVN 542
>11_01_0606 + 4831102-4833033
Length = 643
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 198 TTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAKSQVP 88
++L+K WNT ++SG H CT AS + + + +P
Sbjct: 61 SSLTKSWNTSSNPCEWSGVH-CTSAASSSFVTRLSLP 96
>03_01_0110 - 865605-866004,866094-866712,867659-867863
Length = 407
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 296 PVNPPYYVPL---VEIVPAPWTKPE 361
PV PP Y+ L ++VP PW +PE
Sbjct: 317 PVKPPTYLRLNSKAQLVPNPWRQPE 341
>06_01_1076 - 8778210-8778734
Length = 174
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 296 PVNPPYYVPL---VEIVPAPWTKPE 361
PV PP Y+ L ++VP PW +PE
Sbjct: 115 PVKPPTYLRLNSKPQLVPNPWRQPE 139
>07_03_0344 - 16976854-16977186,16978920-16979000
Length = 137
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +2
Query: 257 ENMKHKAQV--IVSHPVNPPYYVPLVEIVPA 343
+ +K+KA + +V+HP NP + P ++++PA
Sbjct: 22 KTLKYKAVLDYLVAHPPNPVFVGPRLDVMPA 52
>07_03_0522 -
19021915-19022649,19022725-19023012,19023091-19023548,
19023939-19024329,19024422-19024668,19024742-19024815,
19024905-19024961
Length = 749
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 409 RLLAYFFHDSSCFLSHFWFCPRRWNYLYKWH 317
+L++ + ++S +L H W R+W ++Y H
Sbjct: 323 KLISDYQLENSVYLRHIWDIRRKWAFVYFAH 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,015,422
Number of Sequences: 37544
Number of extensions: 223317
Number of successful extensions: 646
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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