Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F03
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)              135   2e-32
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         28   4.7  
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 28   4.7  
SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   6.2  
SB_6983| Best HMM Match : rve (HMM E-Value=0.011)                      27   6.2  
SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)                   27   6.2  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_37007| Best HMM Match : Oleosin (HMM E-Value=0.43)                  27   8.2  

>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score =  135 bits (327), Expect = 2e-32
 Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
 Frame = +2

Query: 137 ECVPENLELKKKVFQNLDNVVDDN-TIXXXXXXXXXXXXXXENMKHKAQVIVSHPVNPPY 313
           EC PENLELKKKVFQNL+  +  +  I              E+++ + + IV+HP+NPPY
Sbjct: 1   ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60

Query: 314 YVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNRIQYAILGEVWRL 487
           YVPLVE++PAPWT   V ++T  +M++IGQ PV L +E +GF++NR+QYA++ E WRL
Sbjct: 61  YVPLVEVIPAPWTDASVIEQTIKLMKDIGQSPVLLKKETNGFIVNRLQYALIAEAWRL 118


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 24/94 (25%), Positives = 42/94 (44%)
 Frame = +2

Query: 110 AVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXENMKHKAQVIV 289
           AV ++  + E   ENLE+KK VF+++      N +              E++ +  + + 
Sbjct: 79  AVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAVIATNTLALDTSVVAEHVTNPERCLG 138

Query: 290 SHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIME 391
              + P Y +P VEI     T PE  +K +  +E
Sbjct: 139 IRFLYPVYSIPEVEITLGSQTSPETIQKVQQFLE 172


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 80  CVKGTCDLAIAVKDAIFVQECVPENL 157
           C++  CD+A+ V D  F+ +CV ++L
Sbjct: 821 CLRDECDVAVMVSDYCFMADCVSDSL 846


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 344  PWTKPEVTKKTRAIMEEIGQEPVTLSREID 433
            PW      +  R + + IG++P TL REID
Sbjct: 1831 PWLSSAEERLARKMAQPIGRDPSTLRREID 1860


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 308  PYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGF-VLNRIQYAILGEVWR 484
            PY  P VE  P+  TKP  T  T   ++   + P+ ++  +DG   +N   +  L E+ +
Sbjct: 2514 PYMSPPVEPSPSH-TKPSATTSTTCHVDTSSRGPIDIAFLVDGSDAINETHFRSLLEIVK 2572

Query: 485  L 487
            +
Sbjct: 2573 I 2573


>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 83  VKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLD 190
           +K + D+  +V DA  V E + ENL  K K+F  LD
Sbjct: 13  LKISLDVPGSVADADLVIEAIVENLRTKHKLFTALD 48


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +2

Query: 257 ENMKHKAQVIVSHPVNP------PYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTL 418
           E+ K K  V+   P  P      P Y+P+    P P   P+   K ++++++I Q  +TL
Sbjct: 101 EDAKRKFLVLAPFPRMPLISPPLPMYIPVPVPQPVPQPVPQPASKGKSVLDKILQLQMTL 160


>SB_46409| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 323

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 80  CVKGTCDLAIAVKDAIFVQECVPENL 157
           C + TCD+A  +KD  +  EC  + L
Sbjct: 176 CDRDTCDVAFYLKDTCYSVECYADEL 201


>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 251

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 263 MKHKAQVIVSHPVNPPYYVPLVE-IVPAPWTKPEVTKKTRAIMEE 394
           M +    +V  P  P    P+   +VP+P T+PEV   T + +E+
Sbjct: 194 MPNSPPQVVDIPETPAVVPPIPTLVVPSPLTQPEVESPTPSCIEQ 238


>SB_26220| Best HMM Match : EGF_2 (HMM E-Value=0.011)
          Length = 353

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 80  CVKGTCDLAIAVKDAIFVQECVPENL 157
           C + TCD+A  +KD  +  EC  + L
Sbjct: 187 CDRDTCDVAFYLKDTCYSVECYADEL 212


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 80   CVKGTCDLAIAVKDAIFVQECVPENL 157
            C K TCD+A  ++D  +   C+   L
Sbjct: 2043 CAKSTCDVAFMLEDECYGVSCISNTL 2068


>SB_37007| Best HMM Match : Oleosin (HMM E-Value=0.43)
          Length = 298

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 373 NKSYHGRNRPRACHP 417
           N   HGRNR R CHP
Sbjct: 179 NDRNHGRNRNRDCHP 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,362,311
Number of Sequences: 59808
Number of extensions: 282872
Number of successful extensions: 2205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2204
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)