Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F03
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put...    63   8e-11
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    54   5e-08
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    53   1e-07
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot...    29   2.2  
At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138...    28   3.8  
At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138...    28   3.8  
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa...    27   5.1  
At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi...    27   6.7  

>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
           putative similar to S(+)-beta-hydroxybutyryl CoA
           dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
           [Paracoccus denitrificans] GI:12003356; contains Pfam
           profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
           binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
           C-terminal
          Length = 294

 Score = 63.3 bits (147), Expect = 8e-11
 Identities = 35/120 (29%), Positives = 59/120 (49%)
 Frame = +2

Query: 122 AIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXENMKHKAQVIVSHPV 301
           A  + E + E+ ++KKK+F++LD +   + I                 +  +QVI  H +
Sbjct: 84  ADIIVEAIVESEDIKKKLFKDLDGIAKSSAILASNTSSISITRLASATRRPSQVIGMHFM 143

Query: 302 NPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNRIQYAILGEVW 481
           NPP  + LVEI+    T  E    T+ + E  G+  V  S++  GFV+NRI   ++ E +
Sbjct: 144 NPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTV-CSQDYAGFVVNRILMPMINEAF 202


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 34/122 (27%), Positives = 57/122 (46%)
 Frame = +2

Query: 86  KGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXXXXXXENM 265
           KG  D      D   V E V EN++LK+ +F+ ++ V   + I              E  
Sbjct: 378 KGVLDYT-EFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKT 436

Query: 266 KHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVL 445
             K +++ +H  +P + +PL+EIV +  T  +V     A+ + I + PV +   I GF +
Sbjct: 437 NSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVVVGNCI-GFAV 495

Query: 446 NR 451
           NR
Sbjct: 496 NR 497


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 32/130 (24%), Positives = 62/130 (47%)
 Frame = +2

Query: 65  DEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXXX 244
           ++    +KG+ D   + +D   V E V EN+ LK+++F +L+     + I          
Sbjct: 374 EKTMSLLKGSLDYE-SFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDL 432

Query: 245 XXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSR 424
               E  K + +++ +H  +P + +PL+EIV    T  +V      + ++I + PV +  
Sbjct: 433 NKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVG- 491

Query: 425 EIDGFVLNRI 454
              GF +NR+
Sbjct: 492 NCTGFAVNRM 501


>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
           (ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
           protein) {Arabidopsis thaliana}; contains Pfam profiles
           PF02171: Piwi domain, PF02170: PAZ domain
          Length = 988

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 332 IVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNR 451
           I+PAPW K     K +  + ++GQ  +   + I+G  ++R
Sbjct: 515 ILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSR 554


>At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 351

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 276 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 154
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 265 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 307


>At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 439

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 276 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 154
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 353 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 395


>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 161

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 290 SHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIM 388
           SHP  PP  VPL   +P P  +P+   +T  +M
Sbjct: 51  SHPSLPPLPVPLPLPLPQPQPQPQQDNETGHLM 83


>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 893

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = +2

Query: 257 ENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEE------IGQEPVTL 418
           E+M +K   +   P +P  Y+ L ++      KPE+ +KTR +M E      +G+  V +
Sbjct: 717 EDMANKGLALA--PSDPALYILLADLYDESG-KPELAQKTRNLMTEKRLSKKLGKSTVEV 773

Query: 419 SREIDGFV 442
             ++  FV
Sbjct: 774 QGKVHSFV 781


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,260
Number of Sequences: 28952
Number of extensions: 191747
Number of successful extensions: 648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)