Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F01
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    29   0.30 
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    27   1.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   4.9  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   6.5  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   8.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   8.5  

>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 340 RRESVYFE*IVQ---NHYPSVRKRDRHY*SQRHLKRQLTS 450
           R E  +FE IV+   ++YP +RKR R + S +  K  LTS
Sbjct: 153 RAECEFFEVIVERLEDNYPEMRKRRRKWMSYQEAKEALTS 192


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 95  LKEAYTSSDDKNVVSSPLGAMFLLSLYRDGAGKQSQEEINNVL 223
           L + Y S D++ +   P     L +LY D  G  +++E+N+ L
Sbjct: 516 LDQGYLSRDNRELWILPFAYYELAALYWDMHGMAAEKEVNHYL 558


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = -3

Query: 297 ENCLLKLLYSLTGCTISTEIYFSPPNTLLISSWLCLPAPSL*RESKNIAPNGDDTTFLSS 118
           E   +   +SL   +++  +Y   P T   SS  C P  +   ++ N  P GD  T  S 
Sbjct: 95  ETVTVSSYWSLVSTSVTGTVYV--PYT---SSVACFPYAT--SDAPNPIPRGDSATSTSI 147

Query: 117 LDVYASLRSFSEALSMASP 61
              Y++  S +  ++ +SP
Sbjct: 148 APTYSASDSSATTITSSSP 166


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 454 LMMSAAFLSVFEINSVDLAFVLTGSDFERFIQNKLIPDVYF 332
           L+   A  SVF +  + L    +G    RF+ NK  P V++
Sbjct: 405 LVNVTAISSVFNLAIIALYIAYSGPLMCRFVYNKFQPGVFY 445


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 374 KITTRQYESEIDTIDLKDT*KGS*HHQSVGK 466
           K+T  Q++ ++ T    DT     HH S GK
Sbjct: 110 KLTKHQFDRKVQTYKNLDTVWEKIHHDSTGK 140


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 222 NTLLISSWLCLPAPSL*RESKNI--APNGDDTTFLSSLDVYASLRSFSEALSMASPRAVR 49
           +TLL SS    P+ S     K++  +P GD  +  SSL    +  + S  L+M +P + +
Sbjct: 141 STLLSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSSLPSLTTKSNLSGNLNMVTPASTQ 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,612
Number of Sequences: 5004
Number of extensions: 46117
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)