Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F01
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0294 + 22855503-22855946,22856346-22856399 32 0.30
01_07_0352 - 42958903-42959010,42959928-42960142,42960651-429607... 31 0.53
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 31 0.69
11_01_0771 + 6453130-6454488 29 2.1
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181... 28 3.7
01_06_1194 - 35313132-35313154,35314462-35314604,35314751-353154... 28 3.7
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 27 8.6
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 27 8.6
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 31.9 bits (69), Expect = 0.30
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +2
Query: 128 NVVSSPLGAMFLLSLYRDGAGKQSQEEINNVLGGEKYISVDIVHPVNE--YSSLSKQFSE 301
NV SPL LSL GAG +++++ ++LG + + +H E + S
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 302 MNPDFFTMASKIYVGNQFILNESFK-ITTRQYESEIDTIDLK 424
A +++ + L +SFK + +Y++E ++D +
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDFQ 146
>01_07_0352 -
42958903-42959010,42959928-42960142,42960651-42960773,
42960884-42960973,42961057-42961164,42961623-42961808,
42961858-42961923,42962312-42962495
Length = 359
Score = 31.1 bits (67), Expect = 0.53
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Frame = +2
Query: 92 LLKEAYTSSDD-KNVVSSPLGAMFLLSLYRDGAGKQSQEEI---------NNVLGGE--K 235
L+ + S D+ NV+SS L A+ L D AGK++ +E V+GGE K
Sbjct: 125 LVTDKRASRDEYANVISSQLEAIEALEAKTDAAGKKNLDEAFMWYKKFLGFQVVGGEGVK 184
Query: 236 YI--SVDIVHPVNEYS 277
++ +DI +P NEYS
Sbjct: 185 FVFSKIDIQNPDNEYS 200
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 30.7 bits (66), Expect = 0.69
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +2
Query: 125 KNVVSSPLGAMFLLSLYRDGAGKQSQEEINNVLGGEKYISVDIVHPVNE--YSSLSKQFS 298
+NV SPL LSL GAG +++++ + LGG S + +H E + S
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPG--SAEGLHAFAEQLVQLVLADAS 92
Query: 299 EMNPDFFTMASKIYVGNQFILNESF-KITTRQYESEIDTIDLK 424
A ++V L ++F + +Y++E ++D +
Sbjct: 93 GAGGPRVAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDFQ 135
>11_01_0771 + 6453130-6454488
Length = 452
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 38 RDYERTALGDAIDKASLKLLKEAYTSSDDKNVVSSPLGAMFLLSLYRDGAGKQSQEEINN 217
R + A+ + +++L +S +N+ SPL LSL GA + +EI
Sbjct: 8 RRHRHRAISGGLTALAVRLADRLGAASPGRNLAFSPLSVHAALSLAAAGAAGGTLDEILA 67
Query: 218 VLG 226
VLG
Sbjct: 68 VLG 70
>05_04_0022 -
17217626-17217643,17217740-17217856,17217987-17218112,
17218194-17218340,17218423-17218533,17218625-17218747,
17218827-17218958,17219157-17219252,17219532-17219653,
17219833-17220130,17220213-17220458,17220711-17220852,
17221068-17222105,17222183-17222262,17222558-17222800,
17222907-17222967,17224059-17224675
Length = 1238
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 11 DVQAFHIFGRDY-ERTALGDAIDKASLKLLKEAYTSSDDKNVVSSPLG 151
D++ F F + +R+AL D + + S+ +A++ SD+ + VSS G
Sbjct: 417 DLRCFSNFSTKFMKRSALSDIVSRGSMSRKFKAFSQSDEWSDVSSRWG 464
>01_06_1194 -
35313132-35313154,35314462-35314604,35314751-35315444,
35315746-35315895,35316011-35316419
Length = 472
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = +2
Query: 56 ALGDAIDKASLKLLKEAYTSSDDKNVVSSPLGAMFLLSLYRDGAGKQSQEEINNVLG 226
A GD+ A LL E Y + +S LGA+F +S GAG S VLG
Sbjct: 14 AAGDS-GAAETSLLPERYAGAGTPAAAASVLGAVFNVSTSVVGAGIMSIPAAMRVLG 69
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 83 SLKLLKEAYTSSDDKNVVSSPLGAMFL 163
S L E+ +SSDD N V SP ++FL
Sbjct: 176 SFSPLHESSSSSDDDNAVPSPTFSLFL 202
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 182 GAGKQSQEEINNVLGGEKYISVDIVHPVNEYSSLSKQFSEMNPDFFTMASKIYVGNQFIL 361
G G+ S + + GGE+ D P + S + E+ P+ AS + +GN +L
Sbjct: 410 GPGESSSDGGHTNGGGEEGSPND--GPTEYSETTSMDYGELPPEKSNFASTMLIGNTDVL 467
Query: 362 NES 370
N S
Sbjct: 468 NGS 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,493
Number of Sequences: 37544
Number of extensions: 281572
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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