Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E24
         (312 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.44 
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 29   1.0  
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  29   1.0  
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)                    29   1.0  
SB_51815| Best HMM Match : RVT_1 (HMM E-Value=0.23)                    28   1.3  
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   2.3  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4)                      27   4.1  
SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)               27   4.1  
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     27   4.1  
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)                  26   7.2  
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)        25   9.5  

>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +1

Query: 49   CTEAETDCPAGTHI-TAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYK 225
            C+E    CP        K  CPS      ECC +VL  +   +SH   C   C E+    
Sbjct: 1304 CSEHSNACPQECSTDNCKPSCPS------ECCLTVLTPLKENKSHQEGCPAVCSESC--- 1354

Query: 226  NADDCNIKNKICC 264
               DC IK   CC
Sbjct: 1355 -KPDCPIK---CC 1363



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 49   CTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRC 204
            C +    CPA      K  CP       ECC +VL+ I   R H   C   C
Sbjct: 1246 CLKDARGCPATCVEDCKPGCPP------ECCFAVLKPIQENREHSQSCPKIC 1291


>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 145 NDNILRPYAVDLDKDLSQ*CEYQPDSPFQLRYTSRRTHYKVVRR 14
           +D  L+P  VD +K++++ CE Q  SP       RR   + +R+
Sbjct: 688 SDQALKPNNVDENKNITRDCELQMKSPSATSLEDRRQEEEELRQ 731


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 145 NDNILRPYAVDLDKDLSQ*CEYQPDSPFQLRYTSRRTHYKVVRR 14
           +D  L+P  VD +K++++ CE Q  SP       RR   + +R+
Sbjct: 827 SDQALKPNNVDENKNITRDCELQMKSPSATSLEDRRQEEEELRQ 870


>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
          Length = 610

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 151 LRKINTCRSHGG-ECMDRCPENLTYKNA 231
           L ++N     GG +C+++CP+  TYK A
Sbjct: 104 LNRVNMMYQEGGLKCLEKCPQPCTYKFA 131


>SB_51815| Best HMM Match : RVT_1 (HMM E-Value=0.23)
          Length = 297

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 205 PENLTYKNADDCNIKNK-ICCIL 270
           PE L  +N DDC I NK + C+L
Sbjct: 254 PEKLNARNRDDCEIHNKTLTCML 276


>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 675

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 130 VECCHSVLRKINTCRSHGGECMDRC-PENLTYKNADDC 240
           V C   V+R++ TC + G  C D   PE +      DC
Sbjct: 578 VTCGEGVVRRVVTCSAGGNRCQDDTKPEVVKLCELPDC 615


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
 Frame = +1

Query: 22   QPCNAFGGKCTEA--ETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECM 195
            Q C  + G   +A  + DCP     + +G C +   R  +C           +  G +C 
Sbjct: 1573 QKCECYPGWAGDACDKLDCPGSPPCSGQGECSNTNPRRCQCFP---------KWGGEKCE 1623

Query: 196  DRCPENLTYKNADDC 240
              C     Y NA DC
Sbjct: 1624 IPCLNGYNYGNASDC 1638


>SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4)
          Length = 299

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +1

Query: 55  EAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYKNAD 234
           E E   P+ TH TA  +  ++ HRG    H VLR +N    +     D     ++   A 
Sbjct: 15  EDEASGPSDTH-TASPM-QTESHRGNGESHEVLRTLNDLNRNMASMADTLASFMSAHTAQ 72

Query: 235 DCNIKNK 255
             N   K
Sbjct: 73  GVNASRK 79


>SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)
          Length = 817

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 34  AFGGKCTEAETDCPAGTH 87
           +FG  C+E E DC  G H
Sbjct: 655 SFGAACSEVEIDCLTGDH 672


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
 Frame = +1

Query: 28  CNAFGGKCTEAETDCPAGTHITAKGL----CP---SQQHRGVECCHSVLRKINTCRSHGG 186
           CN+  G C+E ++  P      AK L    CP   SQ   G  CC     +   C     
Sbjct: 392 CNSSSGTCSEGDSVLPLFKKTPAKQLKNVVCPDETSQCPDGNTCCKLSSGQYGCCPLPNA 451

Query: 187 ECMDR----CPENLTYKNADD-CN 243
            C D     CP   T   +   CN
Sbjct: 452 VCCDDGVHCCPNGYTCDTSSGRCN 475


>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 43  GKCTEAETDCPAGTHITAKG-LCPSQQHRG 129
           GKC   E  C  G  +  K   CPSQ HRG
Sbjct: 296 GKCPPCEQTC--GRTLNCKNHKCPSQCHRG 323


>SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)
          Length = 439

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +1

Query: 70  CPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGEC 192
           C  G   TA   C  +++     C + +   N C S GG C
Sbjct: 14  CSHGRCTTAPDKCECEKYWSGADCGTYIGTCNNCSSVGGTC 54


>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
          Length = 350

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 109 PSQQHRGVECCHSVLRKINTCRSHGGE 189
           P ++H     CH V R+   C+S+ G+
Sbjct: 87  PEKRHHLYRRCHRVCRRYRYCKSYFGK 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,918,673
Number of Sequences: 59808
Number of extensions: 152994
Number of successful extensions: 462
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)