Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E23
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0249 - 1644280-1645161,1645328-1645432,1646322-1646805,164...    33   0.18 
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241...    30   1.2  
03_05_1136 + 30634685-30634919,30635008-30635303,30635398-306357...    29   2.9  
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    27   8.7  

>02_01_0249 -
           1644280-1645161,1645328-1645432,1646322-1646805,
           1647680-1647884,1648538-1648808
          Length = 648

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 164 NLVRSG*SNTDAVRPVEDCSSESIYEHAPVNAFP*P-ASSFDEVVIVLGEVQYAE 3
           +L   G +  D +R   D ++E ++  AP   F    A  FD  V+V+GE  YAE
Sbjct: 481 DLTAGGTTILDGIRRAVDAATEVVFAEAPDAGFMRRNAGRFDAAVVVVGEPPYAE 535


>05_05_0051 +
           21923402-21923763,21923861-21923951,21924048-21924196,
           21924279-21924522,21924664-21924768,21924842-21925024,
           21925118-21925319,21925896-21926372,21926680-21926771,
           21927265-21927444
          Length = 694

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 134 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 3
           +A++      +E +YE  P  A       F   V+V+GEV YAE
Sbjct: 451 EAIKESVGAETEVVYEECPTEATV-ETGEFSYAVVVVGEVPYAE 493


>03_05_1136 +
           30634685-30634919,30635008-30635303,30635398-30635790,
           30635856-30636348,30636422-30636918
          Length = 637

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 164 NLVRSG*SNTDAVRPVEDCSSESIY-EHAPVNAFP*PASSFDEVVIVLGEVQYAE 3
           N V +G +  +A++   D S+   Y EH   ++    A  +D  V+V+GE  YAE
Sbjct: 468 NNVTAGTTILEAIKAAVDESTVIDYTEHPDKSSIAESAKEYDYAVVVVGEEPYAE 522


>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 315 RRSLSEDDKYSYFTEDVDLNTYMYYLHMN 401
           + SL  + KY   +E  DL  + YY H+N
Sbjct: 652 KNSLINNTKYIVLSESGDLQVWRYYKHVN 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,383
Number of Sequences: 37544
Number of extensions: 283402
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)