Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_E23
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17180.1 68416.m02191 serine carboxypeptidase S10 family prot...    31   0.45 
At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / he...    28   4.2  
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot...    28   4.2  
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet...    28   5.5  
At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste...    27   7.3  
At1g03190.2 68414.m00297 DNA repair protein / transcription fact...    27   7.3  
At1g03190.1 68414.m00296 DNA repair protein / transcription fact...    27   7.3  
At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein bet...    27   9.6  

>At3g17180.1 68416.m02191 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II SP:P08819
           [Triticum aestivum] (Carlsberg Res. Commun.
           52:297-311(1987))
          Length = 478

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +3

Query: 252 NYYGIKVTDKSMVVIDWRKGVRRSLSEDDKYSYFTED----VDLNTYMYYLHMNYPYW 413
           +Y G  V DKS  V DW K VR     D  YS + E+    VD+   ++    N   W
Sbjct: 301 SYLGFGVNDKSPAVKDWFKRVRWFEGYDPCYSNYAEEYFNRVDVRLSLHATTRNVARW 358


>At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / heat
           shock transcription factor 1 (HSTF1) identical to heat
           shock transcription factor 1 (HSF1) SP:P41151 from
           [Arabidopsis thaliana] ;contains Pfam profile: PF00447
           HSF-type DNA-binding domain
          Length = 495

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +3

Query: 138 ITLPAPYEIYPYFFVDSHVINKAFMMKMTKAATDPVLMNYYGIKVTDKSMVVIDWRKGVR 317
           +T P P   +P   ++++ +   F+ K      DP          T+ S +V D  +  R
Sbjct: 30  VTAPPPRNPHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSR 89

Query: 318 RSLSEDDKYSYFTEDV-DLNTY 380
             L +  K++ F+  V  LNTY
Sbjct: 90  DLLPKYFKHNNFSSFVRQLNTY 111


>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
           similar to serine carboxylase II-3 GB:CAA55478 GI:474392
           from [Hordeum vulgare]
          Length = 479

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 123 SDCVGITLPAPYEIYPYFFVDSHVINKAFMMKMTKAAT-DPVLMNYYGI 266
           SD +G+T+    +   Y F DSH I+K     + +A T     +NYY I
Sbjct: 242 SDELGLTIMNQCDFEDYTFTDSHNISKLCEAAVNQAGTIITQYVNYYDI 290


>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
           beta-glucosidase, common nasturtium, PIR:T10521
          Length = 626

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 131 AVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 3
           AV+   D  ++ IY   P   F   A  FD  ++ +GE  YAE
Sbjct: 476 AVKKTVDPKTQVIYNQNPDTNFV-KAGDFDYAIVAVGEKPYAE 517


>At5g58050.1 68418.m07265 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to Glycerophosphoryl diester phosphodiesterase
           precursor  (Glycerophosphodiester phosphodiesterase)
           (Surface-exposed lipoprotein D) (Protein D)
           (ImmunoglobulinD-binding protein) (IGD-binding protein)
           (SP:Q06282) {Haemophilus influenzae}
          Length = 753

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 15  YFAKDYDYF----IKTACWLRER-INGGMFVYALTAAVFHRSDCVGITLPAPYEIYP 170
           Y A  +DYF    I+ A ++  R ++G +  +  TA  + RS C  +    PY I P
Sbjct: 615 YIAIAFDYFSDPTIELATFIAGRGVDGVITEFPATATRYLRSPCSDLNKDQPYAILP 671


>At1g03190.2 68414.m00297 DNA repair protein / transcription factor
           protein (UVH6) identical to DNA repair/transcription
           factor protein (UVH6) gi:22651569 gb:AY090788
          Length = 758

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 111 VFHRSDCVGITLP--APYEIYPYFFVDSHVINKAFMMKMTKAATDPVLM 251
           VF R   V IT    +P ++YP     + V++++F M MT+    P+++
Sbjct: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDCICPMVL 495


>At1g03190.1 68414.m00296 DNA repair protein / transcription factor
           protein (UVH6) identical to DNA repair/transcription
           factor protein (UVH6) gi:22651569 gb:AY090788
          Length = 758

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 111 VFHRSDCVGITLP--APYEIYPYFFVDSHVINKAFMMKMTKAATDPVLM 251
           VF R   V IT    +P ++YP     + V++++F M MT+    P+++
Sbjct: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDCICPMVL 495


>At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           TREMBL:AB017502_1
          Length = 608

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 134 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 3
           DA++      +E IYE  P       +  F   ++ +GE  YAE
Sbjct: 453 DAIKEAVGDETEVIYEKTPSKETLASSEGFSYAIVAVGEPPYAE 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,092,671
Number of Sequences: 28952
Number of extensions: 229671
Number of successful extensions: 593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)